From 3d4ae8a2e658ee8a8fd763c42be0d2f2e5d5e90c Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Fri, 6 Oct 2023 12:19:52 -0400 Subject: [PATCH] Fix outputs. --- ...xpected_outputs_examples_pasl_multipld.txt | 68 +++++++++++------- ...pected_outputs_examples_pcasl_multipld.txt | 60 ++++++++++------ ...ed_outputs_examples_pcasl_singlepld_ge.txt | 60 ++++++++++------ ...tputs_examples_pcasl_singlepld_philips.txt | 72 +++++++++++-------- ...tputs_examples_pcasl_singlepld_siemens.txt | 60 ++++++++++------ .../tests/data/expected_outputs_test_001.txt | 72 +++++++++++-------- .../tests/data/expected_outputs_test_002.txt | 52 +++++++++----- .../tests/data/expected_outputs_test_003.txt | 52 +++++++++----- aslprep/tests/utils.py | 22 ++++++ 9 files changed, 326 insertions(+), 192 deletions(-) diff --git a/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt b/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt index 694a14a45..31fe29c5f 100644 --- a/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt +++ b/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt @@ -22,47 +22,51 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-01 aslprep/sub-01.html -aslprep/qc.json aslprep/sub-01/ses-BAS1 aslprep/sub-01/ses-BAS1/perf aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_aslref.json aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_aslref.nii.gz -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-basilGM_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-basil_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-score_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-scrub_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-basilGM_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-basil_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-score_cbf.tsv -aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-scrub_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_desc-basilGM_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_desc-basil_cbf.tsv @@ -113,6 +117,16 @@ aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-basilGM_cbf aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-basil_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-score_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-scrub_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-basilGM_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-basil_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-score_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-scrub_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-basilGM_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-basil_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-score_cbf.tsv +aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Gordon_desc-scrub_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-HCP_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-HCP_desc-basilGM_cbf.tsv aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-HCP_desc-basil_cbf.tsv diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt index fabc1be4f..dddfacce9 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt @@ -22,42 +22,50 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-01 aslprep/sub-01.html -aslprep/qc.json aslprep/sub-01/perf aslprep/sub-01/perf/sub-01_aslref.json aslprep/sub-01/perf/sub-01_aslref.nii.gz -aslprep/sub-01/perf/sub-01_atlas-Glasser_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-basilGM_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-basil_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Gordon_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-basilGM_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-basil_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S1052Parcels_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S1052Parcels_desc-basilGM_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S1052Parcels_desc-basil_cbf.tsv @@ -88,6 +96,12 @@ aslprep/sub-01/perf/sub-01_atlas-4S852Parcels_desc-basil_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S952Parcels_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S952Parcels_desc-basilGM_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S952Parcels_desc-basil_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Glasser_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-basilGM_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-basil_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Gordon_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-basilGM_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-basil_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-HCP_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-HCP_desc-basilGM_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-HCP_desc-basil_cbf.tsv diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt index d62ecd1f1..0949c4dba 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt @@ -22,43 +22,51 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-103 aslprep/sub-103.html -aslprep/qc.json aslprep/sub-103/ses-ge3d aslprep/sub-103/ses-ge3d/perf aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_aslref.json aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_aslref.nii.gz -aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Glasser_cbf.tsv -aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Glasser_desc-basilGM_cbf.tsv -aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Glasser_desc-basil_cbf.tsv -aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Gordon_cbf.tsv -aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Gordon_desc-basilGM_cbf.tsv -aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Gordon_desc-basil_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S1052Parcels_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S1052Parcels_desc-basilGM_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S1052Parcels_desc-basil_cbf.tsv @@ -89,6 +97,12 @@ aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S852Parcels_desc-basil_cbf aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S952Parcels_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S952Parcels_desc-basilGM_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-4S952Parcels_desc-basil_cbf.tsv +aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Glasser_cbf.tsv +aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Glasser_desc-basilGM_cbf.tsv +aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Glasser_desc-basil_cbf.tsv +aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Gordon_cbf.tsv +aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Gordon_desc-basilGM_cbf.tsv +aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-Gordon_desc-basil_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-HCP_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-HCP_desc-basilGM_cbf.tsv aslprep/sub-103/ses-ge3d/perf/sub-103_ses-ge3d_atlas-HCP_desc-basil_cbf.tsv diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt index fcd5d046e..67c11af74 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt @@ -22,47 +22,51 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-103 aslprep/sub-103.html -aslprep/qc.json aslprep/sub-103/ses-philips2d aslprep/sub-103/ses-philips2d/perf aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_aslref.json aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_aslref.nii.gz -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-basilGM_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-basil_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-score_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-scrub_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-basilGM_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-basil_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-score_cbf.tsv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-scrub_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S1052Parcels_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S1052Parcels_desc-basilGM_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S1052Parcels_desc-basil_cbf.tsv @@ -113,6 +117,16 @@ aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S952Parcels_desc aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S952Parcels_desc-basil_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S952Parcels_desc-score_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-4S952Parcels_desc-scrub_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-basilGM_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-basil_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-score_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Glasser_desc-scrub_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-basilGM_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-basil_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-score_cbf.tsv +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-Gordon_desc-scrub_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-HCP_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-HCP_desc-basilGM_cbf.tsv aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_atlas-HCP_desc-basil_cbf.tsv @@ -139,10 +153,10 @@ aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-pvGM_cbf.nii.gz aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-pvWM_cbf.json aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-pvWM_cbf.nii.gz aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-qualitycontrol_cbf.csv -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-score_cbf.json -aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-score_cbf.nii.gz aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-scoreTimeseries_cbf.json aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-scoreTimeseries_cbf.nii.gz +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-score_cbf.json +aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-score_cbf.nii.gz aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-scrub_cbf.json aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-scrub_cbf.nii.gz aslprep/sub-103/ses-philips2d/perf/sub-103_ses-philips2d_desc-timeseries_cbf.json diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt index 02e73970a..95d530f45 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt @@ -22,43 +22,51 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-103 aslprep/sub-103.html -aslprep/qc.json aslprep/sub-103/ses-siemens3d aslprep/sub-103/ses-siemens3d/perf aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_aslref.json aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_aslref.nii.gz -aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Glasser_cbf.tsv -aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Glasser_desc-basilGM_cbf.tsv -aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Glasser_desc-basil_cbf.tsv -aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Gordon_cbf.tsv -aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Gordon_desc-basilGM_cbf.tsv -aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Gordon_desc-basil_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S1052Parcels_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S1052Parcels_desc-basilGM_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S1052Parcels_desc-basil_cbf.tsv @@ -89,6 +97,12 @@ aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S852Parcels_desc aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S952Parcels_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S952Parcels_desc-basilGM_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-4S952Parcels_desc-basil_cbf.tsv +aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Glasser_cbf.tsv +aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Glasser_desc-basilGM_cbf.tsv +aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Glasser_desc-basil_cbf.tsv +aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Gordon_cbf.tsv +aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Gordon_desc-basilGM_cbf.tsv +aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-Gordon_desc-basil_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-HCP_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-HCP_desc-basilGM_cbf.tsv aslprep/sub-103/ses-siemens3d/perf/sub-103_ses-siemens3d_atlas-HCP_desc-basil_cbf.tsv diff --git a/aslprep/tests/data/expected_outputs_test_001.txt b/aslprep/tests/data/expected_outputs_test_001.txt index e6aac7608..fa5f44bbd 100644 --- a/aslprep/tests/data/expected_outputs_test_001.txt +++ b/aslprep/tests/data/expected_outputs_test_001.txt @@ -22,42 +22,50 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-01 aslprep/sub-01.html -aslprep/qc.json aslprep/sub-01/perf aslprep/sub-01/perf/sub-01_aslref.json aslprep/sub-01/perf/sub-01_aslref.nii.gz -aslprep/sub-01/perf/sub-01_atlas-Glasser_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-score_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-scrub_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Gordon_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-score_cbf.tsv -aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-scrub_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S1052Parcels_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S1052Parcels_desc-score_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S1052Parcels_desc-scrub_cbf.tsv @@ -88,6 +96,12 @@ aslprep/sub-01/perf/sub-01_atlas-4S852Parcels_desc-scrub_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S952Parcels_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S952Parcels_desc-score_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-4S952Parcels_desc-scrub_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Glasser_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-score_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Glasser_desc-scrub_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Gordon_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-score_cbf.tsv +aslprep/sub-01/perf/sub-01_atlas-Gordon_desc-scrub_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-HCP_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-HCP_desc-score_cbf.tsv aslprep/sub-01/perf/sub-01_atlas-HCP_desc-scrub_cbf.tsv @@ -102,10 +116,10 @@ aslprep/sub-01/perf/sub-01_desc-confounds_regressors.tsv aslprep/sub-01/perf/sub-01_desc-preproc_asl.json aslprep/sub-01/perf/sub-01_desc-preproc_asl.nii.gz aslprep/sub-01/perf/sub-01_desc-qualitycontrol_cbf.csv -aslprep/sub-01/perf/sub-01_desc-score_cbf.json -aslprep/sub-01/perf/sub-01_desc-score_cbf.nii.gz aslprep/sub-01/perf/sub-01_desc-scoreTimeseries_cbf.json aslprep/sub-01/perf/sub-01_desc-scoreTimeseries_cbf.nii.gz +aslprep/sub-01/perf/sub-01_desc-score_cbf.json +aslprep/sub-01/perf/sub-01_desc-score_cbf.nii.gz aslprep/sub-01/perf/sub-01_desc-scrub_cbf.json aslprep/sub-01/perf/sub-01_desc-scrub_cbf.nii.gz aslprep/sub-01/perf/sub-01_desc-timeseries_cbf.json @@ -120,10 +134,10 @@ aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.json aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-preproc_asl.json aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-preproc_asl.nii.gz -aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-score_cbf.json -aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-score_cbf.nii.gz aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-scoreTimeseries_cbf.json aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-scoreTimeseries_cbf.nii.gz +aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-score_cbf.json +aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-score_cbf.nii.gz aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-scrub_cbf.json aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-scrub_cbf.nii.gz aslprep/sub-01/perf/sub-01_space-MNI152NLin2009cAsym_desc-timeseries_cbf.json @@ -136,10 +150,10 @@ aslprep/sub-01/perf/sub-01_space-T1w_desc-brain_mask.json aslprep/sub-01/perf/sub-01_space-T1w_desc-brain_mask.nii.gz aslprep/sub-01/perf/sub-01_space-T1w_desc-preproc_asl.json aslprep/sub-01/perf/sub-01_space-T1w_desc-preproc_asl.nii.gz -aslprep/sub-01/perf/sub-01_space-T1w_desc-score_cbf.json -aslprep/sub-01/perf/sub-01_space-T1w_desc-score_cbf.nii.gz aslprep/sub-01/perf/sub-01_space-T1w_desc-scoreTimeseries_cbf.json aslprep/sub-01/perf/sub-01_space-T1w_desc-scoreTimeseries_cbf.nii.gz +aslprep/sub-01/perf/sub-01_space-T1w_desc-score_cbf.json +aslprep/sub-01/perf/sub-01_space-T1w_desc-score_cbf.nii.gz aslprep/sub-01/perf/sub-01_space-T1w_desc-scrub_cbf.json aslprep/sub-01/perf/sub-01_space-T1w_desc-scrub_cbf.nii.gz aslprep/sub-01/perf/sub-01_space-T1w_desc-timeseries_cbf.json diff --git a/aslprep/tests/data/expected_outputs_test_002.txt b/aslprep/tests/data/expected_outputs_test_002.txt index 4ca8c152b..7910c99c9 100644 --- a/aslprep/tests/data/expected_outputs_test_002.txt +++ b/aslprep/tests/data/expected_outputs_test_002.txt @@ -22,38 +22,50 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-10R01383 aslprep/sub-10R01383.html -aslprep/qc.json aslprep/sub-10R01383/perf aslprep/sub-10R01383/perf/sub-10R01383_aslref.json aslprep/sub-10R01383/perf/sub-10R01383_aslref.nii.gz -aslprep/sub-10R01383/perf/sub-10R01383_atlas-Glasser_cbf.tsv -aslprep/sub-10R01383/perf/sub-10R01383_atlas-Gordon_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S1052Parcels_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S152Parcels_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S252Parcels_cbf.tsv @@ -64,6 +76,8 @@ aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S652Parcels_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S752Parcels_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S852Parcels_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-4S952Parcels_cbf.tsv +aslprep/sub-10R01383/perf/sub-10R01383_atlas-Glasser_cbf.tsv +aslprep/sub-10R01383/perf/sub-10R01383_atlas-Gordon_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-HCP_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_atlas-Tian_cbf.tsv aslprep/sub-10R01383/perf/sub-10R01383_cbf.json diff --git a/aslprep/tests/data/expected_outputs_test_003.txt b/aslprep/tests/data/expected_outputs_test_003.txt index 98eadc368..aaf69d9ed 100644 --- a/aslprep/tests/data/expected_outputs_test_003.txt +++ b/aslprep/tests/data/expected_outputs_test_003.txt @@ -22,39 +22,51 @@ aslprep/atlas-Glasser_dseg.json aslprep/atlas-Glasser_dseg.tsv aslprep/atlas-Gordon_dseg.json aslprep/atlas-Gordon_dseg.tsv -aslprep/atlas-Tian_dseg.json -aslprep/atlas-Tian_dseg.tsv aslprep/atlas-HCP_dseg.json aslprep/atlas-HCP_dseg.tsv +aslprep/atlas-Tian_dseg.json +aslprep/atlas-Tian_dseg.tsv aslprep/dataset_description.json aslprep/logs aslprep/logs/CITATION.bib aslprep/logs/CITATION.html aslprep/logs/CITATION.md aslprep/logs/CITATION.tex -aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz -aslprep/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +aslprep/qc.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +aslprep/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz aslprep/sub-A00086748 aslprep/sub-A00086748.html -aslprep/qc.json aslprep/sub-A00086748/ses-BAS1 aslprep/sub-A00086748/ses-BAS1/perf aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_aslref.json aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_aslref.nii.gz -aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-Glasser_cbf.tsv -aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-Gordon_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S1052Parcels_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S152Parcels_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S252Parcels_cbf.tsv @@ -65,6 +77,8 @@ aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S652Parcels_cb aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S752Parcels_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S852Parcels_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-4S952Parcels_cbf.tsv +aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-Glasser_cbf.tsv +aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-Gordon_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-HCP_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_atlas-Tian_cbf.tsv aslprep/sub-A00086748/ses-BAS1/perf/sub-A00086748_ses-BAS1_cbf.json diff --git a/aslprep/tests/utils.py b/aslprep/tests/utils.py index 61b56dff5..1738c6f6c 100644 --- a/aslprep/tests/utils.py +++ b/aslprep/tests/utils.py @@ -10,9 +10,12 @@ import numpy as np import requests from bids.layout import BIDSLayout +from nipype import logging from aslprep import config +LOGGER = logging.getLogger("nipype.utils") + def download_test_data(dset, data_dir=None): """Download test data.""" @@ -180,3 +183,22 @@ def chdir(path): yield finally: os.chdir(oldpwd) + + +def reorder_expected_outputs(): + """Load each of the expected output files and sort the lines alphabetically. + + This function is called manually by devs when they modify the test outputs. + """ + test_data_path = get_test_data_path() + expected_output_files = sorted(glob(os.path.join(test_data_path, "expected_outputs_*.txt"))) + for expected_output_file in expected_output_files: + LOGGER.info(f"Sorting {expected_output_file}") + + with open(expected_output_file, "r") as fo: + file_contents = fo.readlines() + + file_contents = sorted(file_contents) + + with open(expected_output_file, "w") as fo: + fo.writelines(file_contents)