From 1f079dead904fe17a9950bc455d78fa1d2ca625c Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Wed, 15 Nov 2023 16:03:47 -0500
Subject: [PATCH] fix.

---
 aslprep/workflows/asl/base.py      |  2 +-
 aslprep/workflows/asl/confounds.py | 20 +++++++++++++-------
 aslprep/workflows/asl/plotting.py  |  7 ++++---
 3 files changed, 18 insertions(+), 11 deletions(-)

diff --git a/aslprep/workflows/asl/base.py b/aslprep/workflows/asl/base.py
index 38e6c8fa9..4a077946b 100644
--- a/aslprep/workflows/asl/base.py
+++ b/aslprep/workflows/asl/base.py
@@ -937,7 +937,7 @@ def init_asl_preproc_wf(
             (refine_mask, plot_cbf_wf, [("out_mask", "inputnode.asl_mask")]),
             (asl_confounds_wf, plot_cbf_wf, [
                 ("outputnode.crown_mask", "inputnode.crown_mask"),
-                (("outputnode.acompcor_masks", _select_last_in_list), "inputnode.acompcor_mask"),
+                ("outputnode.acompcor_masks", "inputnode.acompcor_masks"),
             ]),
         ])
         # fmt:on
diff --git a/aslprep/workflows/asl/confounds.py b/aslprep/workflows/asl/confounds.py
index 5a6d3be07..0e4308d1a 100644
--- a/aslprep/workflows/asl/confounds.py
+++ b/aslprep/workflows/asl/confounds.py
@@ -425,14 +425,20 @@ def init_carpetplot_wf(
 
     # fmt:off
     workflow.connect([
-        (inputnode, mrg_xfms, [("t1_bold_xform", "in1"),
-                               ("std2anat_xfm", "in2")]),
+        (inputnode, mrg_xfms, [
+            ("t1_bold_xform", "in1"),
+            ("std2anat_xfm", "in2"),
+        ]),
         (inputnode, resample_parc, [("bold_mask", "reference_image")]),
-        (inputnode, parcels, [("crown_mask", "crown_mask")]),
-        (inputnode, parcels, [("acompcor_mask", "acompcor_mask")]),
-        (inputnode, conf_plot, [("bold", "in_nifti"),
-                                ("confounds_file", "confounds_file"),
-                                ("dummy_scans", "drop_trs")]),
+        (inputnode, parcels, [
+            ("crown_mask", "crown_mask"),
+            ("acompcor_mask", "acompcor_mask"),
+        ]),
+        (inputnode, conf_plot, [
+            ("bold", "in_nifti"),
+            ("confounds_file", "confounds_file"),
+            ("dummy_scans", "drop_trs"),
+        ]),
         (mrg_xfms, resample_parc, [("out", "transforms")]),
         (resample_parc, parcels, [("output_image", "segmentation")]),
         (parcels, conf_plot, [("out", "in_segm")]),
diff --git a/aslprep/workflows/asl/plotting.py b/aslprep/workflows/asl/plotting.py
index 56acc1a74..4466ced52 100644
--- a/aslprep/workflows/asl/plotting.py
+++ b/aslprep/workflows/asl/plotting.py
@@ -10,6 +10,7 @@
 from aslprep.interfaces.ants import ApplyTransforms
 from aslprep.interfaces.confounds import GatherCBFConfounds
 from aslprep.interfaces.plotting import CBFByTissueTypePlot, CBFSummary
+from aslprep.utils.misc import _select_last_in_list
 from aslprep.workflows.asl.confounds import init_carpetplot_wf
 
 
@@ -47,7 +48,7 @@ def init_plot_cbf_wf(
                 "std2anat_xfm",
                 # If plot_timeseries is True
                 "crown_mask",
-                "acompcor_mask",
+                "acompcor_masks",
                 # CBF outputs
                 "mean_cbf",
                 # Single-delay outputs
@@ -124,7 +125,7 @@ def init_plot_cbf_wf(
         workflow.connect([
             (inputnode, merge_rois, [
                 ("asl_mask", "in1"),
-                ("acompcor_mask", "in2"),
+                ("acompcor_masks", "in2"),
             ]),
             (inputnode, signals, [("cbf_ts", "in_file")]),
             (merge_rois, signals, [("out", "label_files")]),
@@ -169,7 +170,7 @@ def init_plot_cbf_wf(
                 ("asl_mask", "inputnode.bold_mask"),
                 ("anat_to_aslref_xfm", "inputnode.t1_bold_xform"),
                 ("crown_mask", "inputnode.crown_mask"),
-                ("acompcor_mask", "inputnode.acompcor_mask"),
+                (("acompcor_mask", _select_last_in_list), "inputnode.acompcor_mask"),
             ]),
             (create_cbf_confounds, carpetplot_wf, [
                 ("confounds_file", "inputnode.confounds_file"),