diff --git a/bin/identify_tophit_and_contaminants2.py b/bin/identify_tophit_and_contaminants2.py index 9f15f04..1a627a2 100755 --- a/bin/identify_tophit_and_contaminants2.py +++ b/bin/identify_tophit_and_contaminants2.py @@ -6,10 +6,6 @@ import argparse import re import copy -import boto3 -import sys -import configparser -import pathlib # define process requirements function def process_requirements(args): @@ -22,8 +18,6 @@ def process_requirements(args): myco_dir = args[6] prev_species_json = args[7] - credential_file = "~/.aws/config" - """ # check if input files exist and not empty if not os.path.exists(afanc_json):