This folder contains various configuration examples and inputs (which might in turn be outputs, i.e. intermediate results of the pipeline). Target library inputs can be found in libs/, nextflow configuration files in configs/, annotations for downstream processing in annotations/, downstream intermedidate result files for the reanalysis of the first 10 datasets can be found in the table below. In order to integrate with the reanalysis code, please make sure to place the files in their target folders after download. For convenience, we prepared batch download files in the respective folders (intermediate-results/tric_tsvs and intermediate-results/msstats_rdas ).