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Program.cs
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Program.cs
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using System;
using System.Collections.Generic;
using System.Threading;
using PRISM;
using PRISM.Logging;
using PRISMDatabaseUtils;
namespace DataPackage_Archive_Manager
{
/// <summary>
/// This program uploads new/changed data package files to MyEMSL
/// </summary>
/// <remarks>
/// <para>
/// Written by Matthew Monroe for the Department of Energy (PNNL, Richland, WA)
/// </para>
/// <para>
/// E-mail: [email protected] or [email protected]
/// Website: https://github.com/PNNL-Comp-Mass-Spec/ or https://www.pnnl.gov/integrative-omics
/// </para>
/// </remarks>
internal static class Program
{
public static readonly string ProgramDate;
static Program()
{
ProgramDate = ThisAssembly.GitCommitDate.ToLocalTime().ToString("MMMM dd, yyyy");
}
private static BaseLogger.LogLevels mLogLevel;
public static int Main(string[] args)
{
mLogLevel = BaseLogger.LogLevels.INFO;
try
{
var exeName = System.IO.Path.GetFileName(System.Reflection.Assembly.GetExecutingAssembly().GetName().Name);
var parser = new CommandLineParser<CommandLineOptions>(exeName,
AppUtils.GetAppVersion(ProgramDate))
{
ProgramInfo = "This program uploads new/changed data package files to MyEMSL",
ContactInfo =
"Program written by Matthew Monroe for the Department of Energy (PNNL, Richland, WA)" + Environment.NewLine +
"E-mail: [email protected] or [email protected]" + Environment.NewLine +
"Website: https://github.com/PNNL-Comp-Mass-Spec/ or https://www.pnnl.gov/integrative-omics"
};
var result = parser.ParseArgs(args, false, false);
var options = result.ParsedResults;
if (!result.Success || !options.Validate())
{
if (parser.CreateParamFileProvided)
{
return 0;
}
parser.PrintHelp();
// Delay for 1500 msec in case the user double-clicked this file from within Windows Explorer (or started the program via a shortcut)
Thread.Sleep(1500);
return -1;
}
if (options.DebugMode)
{
mLogLevel = BaseLogger.LogLevels.DEBUG;
}
var updatesArePending = WindowsUpdateStatus.UpdatesArePending(out var pendingWindowsUpdateMessage);
if (updatesArePending)
{
Console.WriteLine(pendingWindowsUpdateMessage);
Console.WriteLine("Will not contact archive any data packages");
return 0;
}
var connectionStringToUse = DbToolsFactory.AddApplicationNameToConnectionString(options.DBConnectionString, "DataPackageArchiveMgr");
var archiver = new DataPackageArchiver(connectionStringToUse, mLogLevel)
{
DisableVerify = options.DisableVerify,
SkipCheckExisting = options.SkipCheckExisting,
TraceMode = options.TraceMode
};
// Attach the events
archiver.DebugEvent += Archiver_DebugEvent;
archiver.ErrorEvent += Archiver_ErrorEvent;
archiver.StatusEvent += Archiver_StatusEvent;
archiver.WarningEvent += Archiver_WarningEvent;
bool success;
if (options.VerifyOnly)
{
// Verify previously updated data
success = archiver.VerifyUploadStatus();
}
else
{
List<KeyValuePair<int, int>> dataPkgIDs;
if (options.PackageIds.StartsWith("*"))
{
// Process all Data Packages by passing an empty list to ParseDataPkgIDList
dataPkgIDs = new List<KeyValuePair<int, int>>();
}
else
{
// Parse the data package ID list
dataPkgIDs = archiver.ParseDataPkgIDList(options.PackageIds);
if (dataPkgIDs.Count == 0)
{
// Data Package IDs not defined
ShowErrorMessage("DataPackageIDList was empty; should contain integers or '*'");
parser.PrintHelp();
return -2;
}
}
// Upload new data, then verify previously updated data
success = archiver.StartProcessing(dataPkgIDs, options.DateThreshold, options.PreviewMode);
}
FileLogger.FlushPendingMessages();
if (!success)
{
ShowErrorMessage("Error archiving the data packages: " + archiver.ErrorMessage);
return -3;
}
}
catch (Exception ex)
{
FileLogger.FlushPendingMessages();
Console.WriteLine("Error occurred in Program->Main: " + Environment.NewLine + ex.Message);
Console.WriteLine(ex.StackTrace);
Thread.Sleep(1500);
return -1;
}
return 0;
}
private static void ShowErrorMessage(string message, Exception ex = null)
{
ConsoleMsgUtils.ShowError(message, ex);
}
private static void Archiver_DebugEvent(string message)
{
ConsoleMsgUtils.ShowDebug(message);
}
private static void Archiver_ErrorEvent(string errorMessage, Exception ex)
{
ConsoleMsgUtils.ShowError(errorMessage, ex);
}
private static void Archiver_StatusEvent(string message)
{
Console.WriteLine(message);
}
private static void Archiver_WarningEvent(string message)
{
ConsoleMsgUtils.ShowWarning(message);
}
}
}