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subtreeAuspice1_genome_test_42ab7_5ddf20.json
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subtreeAuspice1_genome_test_42ab7_5ddf20.json
1
{ "version": "v2", "meta": { "title": "Subtree with Portugal\/PT50787\/2024|EPI_ISL_19190930|2024-05-22, Portugal\/PT50879\/2024|EPI_ISL_19190845|2024-05-09, Switzerland\/ZH-UZH-IMV-4846f06f\/2024|OZ075087.1|2024-04-17, Japan\/FR047-0131\/2024|EPI_ISL_19164172|2024-04-16, Switzerland\/TG-UZH-IMV-4830bb2b\/2024|OZ025558.1|2024-03-16, Switzerland\/ZH-UZH-IMV-482e1baf\/2024|OZ025632.1|2024-03-13, USA\/VA-GBW-GKISBBBB30880\/2024|PQ026667.1|2024-03-14, USA\/VA-GBW-H10-014-4214\/2024|PQ026625.1|2024-03-14", "description": "Dataset generated by [UShER web interface](https:\/\/genome-test.gi.ucsc.edu\/cgi-bin\/hgPhyloPlace) using the [usher](https:\/\/github.com\/yatisht\/usher\/) program. If you have metadata you wish to display, you can now drag on a CSV file and it will be added into this view, [see here](https:\/\/docs.nextstrain.org\/projects\/auspice\/en\/latest\/advanced-functionality\/drag-drop-csv-tsv.html) for more info.", "panels": [ "tree", "entropy"] , "display_defaults": { "branch_label": "aa mutations", "color_by": "pango_lineage_usher" }, "colorings": [ { "key": "userOrOld", "title": "Sample type", "type": "categorical", "scale": [ [ "uploaded sample", "#CC0000" ], [ "public", "#000000" ] ] }, { "key": "gt", "title": "Genotype", "type": "categorical" }, { "key": "pango_lineage", "title": "Pango lineage", "type": "categorical" }, { "key": "Nextstrain_clade", "title": "Nextstrain Clade", "type": "categorical", "scale": [ [ "20H (Beta)", "#5E1D9D" ], [ "20I (Alpha)", "#4D22AD" ], [ "20J (Gamma)", "#4530BB" ], [ "21A (Delta)", "#403FC6" ], [ "21J (Delta)", "#3F51CC" ], [ "21K (Delta)", "#3F62D0" ], [ "21B (Kappa)", "#4272CE" ], [ "21C (Epsilon)", "#4681CA" ], 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