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multiple nodes mapping to the same otu element in nexson #119

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mtholder opened this issue May 29, 2014 · 2 comments
Open

multiple nodes mapping to the same otu element in nexson #119

mtholder opened this issue May 29, 2014 · 2 comments

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@mtholder
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I think that two nodes in tree6754 of study 2918 are mapping to the same otu: otu432184 which is verboten in nexml

@mtholder
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I'm seeing, in the JSON:
{
"@about": "#node1175250",
"@id": "node1175250",
"@otu": "otu432184",
"meta": [
{
"$": true,
"@datatype": "xsd:boolean",
"@Property": "ot:isLeaf",
"@xsi:type": "nex:LiteralMeta"
}
]
},
{
"@about": "#node1175251",
"@id": "node1175251",
"@otu": "otu432184",
"meta": [
{
"$": true,
"@datatype": "xsd:boolean",
"@Property": "ot:isLeaf",
"@xsi:type": "nex:LiteralMeta"
}
]

@rhr
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rhr commented May 31, 2014

This is the old unique-leaf-labels issue. The uploaded newick string contained two identical leaf labels. Phylografter still doesn't check this on input, and instead just maps leaf nodes to otus based on the label.

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