Visconnect prototype metrics (#768)

* wip

* orcid PDF OA state workaround

* metrics wip

* cleanup

* restructuring of common.utils

* metrics for orcid wip

* code restructuring

* metrics enrichment for orcid

* calculate aggregated author metrics

* fix metrics datatype

* bugfix

* bugfix

* add metrics runner in R

* new backend data structure for author metadata

* feat: orcid metracs integration (#765)

* Visconnect prototype metrics updates (#766)

* feat: orcid metracs integration

* feat: refactor scale map

* feat: refactor orcid client

* refactor: metrics and base workers

* feat: add orcid integration tests

* feat: configure testing environment

* fix: data transformation and orcid authentication

* refactor: orcid client integration

* refactor: orcid client integration

* minor: logging

* minor: logging

* feat: fix academic age calculation

* feat: resolve comments after review

* feat: improve orcid structure

* feat: improve orcid structure

* refactor and improve data model

---------

Co-authored-by: chreman <[email protected]>

Author: modsen-hedgehog

.docker.test.env

@@ -0,0 +1,26 @@
+# APP
+FLASK_ENV=development
+BEHIND_PROXY=False
+SERVICE_VERSION=7d60186f594d420f82901f0514eb3c7e6b6e62d5
+LOGLEVEL=DEBUG
+LOGFILE="/var/log/headstart/headstart.log"
+
+# DB
+POSTGRES_USER=testuser
+POSTGRES_PASSWORD=postgres
+POSTGRES_HOST=db_server
+POSTGRES_PORT=5434
+POSTGRES_DATABASE=testdb
+
+# REDIS
+REDIS_HOST=redis-1
+REDIS_PORT=6355
+REDIS_PASSWORD=testredispassword
+REDIS_DB=0
+
+# R
+R_BASE_APIKEY=5812aa4367eb1dc3d366d99fdaaef0e3
+
+# ORCID
+ORCID_CLIENT_ID="APP-DL8ZAR72EZWW15NX"
+ORCID_CLIENT_SECRET="a3389b1a-19c0-4f78-857a-4aba19f5fa46"

.flake8

@@ -0,0 +1,5 @@
+[flake8]
+max-line-length = 100
+# required for compatibility with Black:
+extend-ignore = E203
+exclude = .venv

.gitignore

@@ -63,4 +63,15 @@ server/preprocessing/other-scripts/renv
 /nbproject/private/
 /server/nbproject/private/
 .pytest_cache
+*.egg-info/
 *__pycache__*
+
+# Mac files
+.DS_Store
+
+# personal
+.vscode/settings.json
+# temporal
+local_dev/config_local_headstart.ini
+local_dev/config_local_searchflow.ini
+