From 78de0c6940e7c624627c25c474ddcce39c3459b5 Mon Sep 17 00:00:00 2001 From: Shifu Chen Date: Sat, 2 Sep 2017 20:14:00 +0800 Subject: [PATCH] Update README.md --- README.md | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/README.md b/README.md index ef734da..4be4622 100644 --- a/README.md +++ b/README.md @@ -74,3 +74,14 @@ When the gene list file (`genes.txt`) is prepared, you can used following comman julia scripts/gen_fusion_file.jl -r hg19 -g genes.txt -f fusion.csv ``` The reference genome is specified by `-r` option, which can be hg19/GRch37/GRch38. + +# HTML report +FusionScan can generate very informative and interactive HTML pages to visualize the fusions with following information: +* the fusion genes, along with their transcripts. +* the inferred break point with reference genome coordinations. +* the inferred fusion protein, with all exons and the transcription direction. +* the supporting reads, with all bases colorized according to their quality scores. +* the number of supporting reads, and how many of them are unique (the rest may be duplications) +## A HTML report example +![image](http://www.opengene.org/FusionScan/eml4alk.png) +See the HTML page of this picture: http://opengene.org/FusionScan/report.html