diff --git a/appveyor-nightly.yml b/appveyor-nightly.yml index ef292dfa7..25447e001 100644 --- a/appveyor-nightly.yml +++ b/appveyor-nightly.yml @@ -53,7 +53,7 @@ build_script: - Rscript install_dependencies.R before_test: - - cinst pandoc + - choco install pandoc - ps: $env:Path += ";C:\Program Files (x86)\Pandoc\" - pandoc -v diff --git a/appveyor.yml b/appveyor.yml index b6bd45bc7..26ab7084f 100644 --- a/appveyor.yml +++ b/appveyor.yml @@ -50,8 +50,6 @@ on_failure: - 7z a failure.zip *.Rcheck\* - appveyor PushArtifact failure.zip - - artifacts: - path: '*.Rcheck\**\*.log' name: Logs @@ -65,7 +63,6 @@ artifacts: - path: '*.Rcheck\**\*.Rout' name: Logs - skip_commits: files: - "*.md" diff --git a/vignettes/efficient-calculations.Rmd b/vignettes/efficient-calculations.Rmd index 04b691886..ee0e53fda 100644 --- a/vignettes/efficient-calculations.Rmd +++ b/vignettes/efficient-calculations.Rmd @@ -210,7 +210,7 @@ will impact the performance significantly. State variable parameters, i.e., those defined by a right hand side (RHS), are treated as molecules internally. Trying to create and run a simulation batch with a state variable parameter set as a variable parameter will result in an error: -```{r BatchRunStateVarParam, eval=TRUE, error = TRUE, purl = FALSE} +```{r BatchRunStateVarParam, error = TRUE, purl = FALSE} stateVariableParam <- getParameter(path = "Organism|Lumen|Stomach|Liquid", container = sim1) print(stateVariableParam) @@ -226,6 +226,7 @@ results <- runSimulationBatches(simBatch) Instead, the state variable parameter should be treated as a species and set as a variable molecule start value. ```{r BatchRunStateVarMolecule, eval=TRUE} +stateVariableParam <- getParameter(path = "Organism|Lumen|Stomach|Liquid", container = sim1) # Create simulation batch with state variable parameter set as a variable molecule simBatch <- createSimulationBatch(simulation = sim1, moleculesOrPaths = stateVariableParam) # Add run values