Skip to content

Is there a pre-trained cell type annotation model available with weights that can be directly used on the MS dataset? #16

Open
@noob000007

Description

@noob000007

Is there a pre-trained cell type annotation model available with weights that can be directly used on the MS dataset?

elif DATASET == 'MS':
data_train = ad.read_h5ad(f'../data/c_data.h5ad')
data_test = ad.read_h5ad(f'../data/filtered_ms_adata.h5ad')
data_train.var = data_train.var.set_index('index_column')
data_test.var = data_test.var.set_index('index_column')
train_num = data_train.shape[0]
data = ad.concat([data_train, data_test])
data.var_names_make_unique()

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions