This repository contains a Bioconductor package to deploy the Advanced subbook of the Orchestrating Single-Cell Analysis book. Install all relevant packages used in the book with:
BiocManager::install(remotes::local_package_deps(dependencies=TRUE))Building the book can be done by either running the usual bookdown invocation in inst/book:
bookdown::render_book("index.Rmd")Or by R CMD build on the package itself to compile the book during the vignette build process.
To contribute reports, follow standard procedure: fork and PR.
This requires updating of files in inst/rebook to support links from external packages.
The updates are usually handled by the GitHub Action but can be done manually with:
rebook::updateDependencies("inst/book", path='DESCRIPTION', extra=c("Rtsne"))
rebook::configureBook(prefix="Advanced", redirect='redirect.txt')