Skip to content

Commit

Permalink
mat + sparsity: use dset.layout_vec.local_size for sizes
Browse files Browse the repository at this point in the history
  • Loading branch information
ksagiyam committed Jan 8, 2024
1 parent d017d59 commit d7b08cc
Show file tree
Hide file tree
Showing 4 changed files with 14 additions and 50 deletions.
8 changes: 4 additions & 4 deletions pyop2/sparsity.pyx
Original file line number Diff line number Diff line change
Expand Up @@ -128,13 +128,13 @@ def build_sparsity(sparsity):
preallocator.setType(PETSc.Mat.Type.PREALLOCATOR)
if mixed:
# Sparsity is the dof sparsity.
nrows = sum(s.size*s.cdim for s in rset)
ncols = sum(s.size*s.cdim for s in cset)
nrows = rset.layout_vec.local_size
ncols = cset.layout_vec.local_size
preallocator.setLGMap(rmap=rset.unblocked_lgmap, cmap=cset.unblocked_lgmap)
else:
# Sparsity is the block sparsity
nrows = rset.size
ncols = cset.size
nrows = rset.layout_vec.local_size // rset.layout_vec.block_size
ncols = cset.layout_vec.local_size // cset.layout_vec.block_size
preallocator.setLGMap(rmap=rset.scalar_lgmap, cmap=cset.scalar_lgmap)

preallocator.setSizes(size=((nrows, None), (ncols, None)),
Expand Down
25 changes: 2 additions & 23 deletions pyop2/types/dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -156,11 +156,11 @@ def field_ises(self):
ises = []
nlocal_rows = 0
for dset in self:
nlocal_rows += dset.size * dset.cdim
nlocal_rows += dset.layout_vec.local_size
offset = self.comm.scan(nlocal_rows)
offset -= nlocal_rows
for dset in self:
nrows = dset.size * dset.cdim
nrows = dset.layout_vec.local_size
iset = PETSc.IS().createStride(nrows, first=offset, step=1,
comm=self.comm)
iset.setBlockSize(dset.cdim)
Expand Down Expand Up @@ -284,27 +284,6 @@ def unblocked_lgmap(self):
bsize=1, comm=self.lgmap.comm)
return lgmap

@utils.cached_property
def field_ises(self):
"""A list of PETSc ISes defining the global indices for each set in
the DataSet.
Used when extracting blocks from matrices for solvers."""
ises = []
nlocal_rows = 0
for dset in self:
nlocal_rows += dset.size * dset.cdim
offset = self.comm.scan(nlocal_rows)
offset -= nlocal_rows
for dset in self:
nrows = dset.size * dset.cdim
iset = PETSc.IS().createStride(nrows, first=offset, step=1,
comm=self.comm)
iset.setBlockSize(dset.cdim)
ises.append(iset)
offset += nrows
return tuple(ises)

@utils.cached_property
def local_ises(self):
"""A list of PETSc ISes defining the local indices for each set in the DataSet.
Expand Down
27 changes: 6 additions & 21 deletions pyop2/types/mat.py
Original file line number Diff line number Diff line change
Expand Up @@ -66,18 +66,13 @@ def __init__(self, dsets, maps, *, iteration_regions=None, name=None, nest=None,
self._dims = (((1, 1),),)
self._d_nnz = None
self._o_nnz = None
self._nrows = None if isinstance(dsets[0], GlobalDataSet) else self._rmaps[0].toset.size
self._ncols = None if isinstance(dsets[1], GlobalDataSet) else self._cmaps[0].toset.size
self.lcomm = mpi.internal_comm(dsets[0].comm if isinstance(dsets[0], GlobalDataSet) else self._rmaps[0].comm)
self.rcomm = mpi.internal_comm(dsets[1].comm if isinstance(dsets[1], GlobalDataSet) else self._cmaps[0].comm)
else:
self.lcomm = mpi.internal_comm(self._rmaps[0].comm)
self.rcomm = mpi.internal_comm(self._cmaps[0].comm)

rset, cset = self.dsets
# All rmaps and cmaps have the same data set - just use the first.
self._nrows = rset.size
self._ncols = cset.size

self._has_diagonal = (rset == cset)

Expand Down Expand Up @@ -277,16 +272,6 @@ def shape(self):
return (len(self._dsets[0] or [1]),
len(self._dsets[1] or [1]))

@utils.cached_property
def nrows(self):
"""The number of rows in the ``Sparsity``."""
return self._nrows

@utils.cached_property
def ncols(self):
"""The number of columns in the ``Sparsity``."""
return self._ncols

@utils.cached_property
def nested(self):
r"""Whether a sparsity is monolithic (even if it has a block structure).
Expand Down Expand Up @@ -376,8 +361,6 @@ def __init__(self, parent, i, j):
self._dsets = (parent.dsets[0][i], parent.dsets[1][j])
self._rmaps = tuple(m.split[i] for m in parent.rmaps)
self._cmaps = tuple(m.split[j] for m in parent.cmaps)
self._nrows = self._dsets[0].size
self._ncols = self._dsets[1].size
self._has_diagonal = i == j and parent._has_diagonal
self._parent = parent
self._dims = tuple([tuple([parent.dims[i][j]])])
Expand Down Expand Up @@ -520,7 +503,7 @@ def dims(self):
@utils.cached_property
def nrows(self):
"The number of rows in the matrix (local to this process)"
return sum(d.size * d.cdim for d in self.sparsity.dsets[0])
return self.sparsity.dsets[0].layout_vec.local_size

@utils.cached_property
def nblock_rows(self):
Expand All @@ -530,7 +513,8 @@ def nblock_rows(self):
by the dimension of the row :class:`DataSet`.
"""
assert len(self.sparsity.dsets[0]) == 1, "Block rows don't make sense for mixed Mats"
return self.sparsity.dsets[0].size
layout_vec = self.sparsity.dsets[0].layout_vec
return layout_vec.local_size // layout_vec.block_size

@utils.cached_property
def nblock_cols(self):
Expand All @@ -540,12 +524,13 @@ def nblock_cols(self):
divided by the dimension of the column :class:`DataSet`.
"""
assert len(self.sparsity.dsets[1]) == 1, "Block cols don't make sense for mixed Mats"
return self.sparsity.dsets[1].size
layout_vec = self.sparsity.dsets[1].layout_vec
return layout_vec.local_size // layout_vec.block_size

@utils.cached_property
def ncols(self):
"The number of columns in the matrix (local to this process)"
return sum(d.size * d.cdim for d in self.sparsity.dsets[1])
return self.sparsity.dsets[1].layout_vec.local_size

@utils.cached_property
def sparsity(self):
Expand Down
4 changes: 2 additions & 2 deletions test/unit/test_matrices.py
Original file line number Diff line number Diff line change
Expand Up @@ -582,7 +582,7 @@ def test_invalid_mode(self, elements, elem_node, mat, mode):
def test_mat_set_diagonal(self, nodes, elem_node, n):
"Set the diagonal of the entire matrix to 1.0"
mat = op2.Mat(op2.Sparsity(nodes**n, elem_node), valuetype)
nrows = mat.sparsity.nrows
nrows = mat.nblock_rows
mat.set_local_diagonal_entries(list(range(nrows)))
mat.assemble()
assert (mat.values == np.identity(nrows * n)).all()
Expand All @@ -591,7 +591,7 @@ def test_mat_set_diagonal(self, nodes, elem_node, n):
def test_mat_repeated_set_diagonal(self, nodes, elem_node, n):
"Set the diagonal of the entire matrix to 1.0"
mat = op2.Mat(op2.Sparsity(nodes**n, elem_node), valuetype)
nrows = mat.sparsity.nrows
nrows = mat.nblock_rows
mat.set_local_diagonal_entries(list(range(nrows)))
mat.assemble()
assert (mat.values == np.identity(nrows * n)).all()
Expand Down

0 comments on commit d7b08cc

Please sign in to comment.