From 1c70931695492be016d43901ecb66118e451fe1e Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 13 Dec 2023 13:58:52 -0500
Subject: [PATCH] Update dashboard run (#86)

Co-authored-by: matentzn <matentzn@users.noreply.github.com>
---
 dashboard/afpo/dashboard.html    |  2 +-
 dashboard/afpo/dashboard.yml     |  2 +-
 dashboard/analysis.html          | 46 ++++++++++++++++----------------
 dashboard/carolio/dashboard.html |  2 +-
 dashboard/carolio/dashboard.yml  |  2 +-
 dashboard/dashboard-results.yml  | 40 +++++++++++++--------------
 dashboard/gndo/dashboard.html    |  2 +-
 dashboard/gndo/dashboard.yml     |  2 +-
 dashboard/index.html             |  8 +++---
 dashboard/occo/dashboard.html    | 30 ++++++++++-----------
 dashboard/occo/dashboard.yml     | 34 +++++++++++------------
 dashboard/occo/robot_report.html |  4 +--
 12 files changed, 87 insertions(+), 87 deletions(-)

diff --git a/dashboard/afpo/dashboard.html b/dashboard/afpo/dashboard.html
index 9901f996..97e3bbd1 100644
--- a/dashboard/afpo/dashboard.html
+++ b/dashboard/afpo/dashboard.html
@@ -9,7 +9,7 @@
             <div class="col-md-8">
                 <h1>Dashboard Report - <a href="http://obofoundry.org/ontology/afpo.html">afpo</a></h1>
                 <p class="lead"><b>Version</b>: http://purl.obolibrary.org/obo/afpo/releases/2023-10-30/afpo.owl</p>
-                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-04 13:13:12.345844</p>
+                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-11 13:13:49.257864</p>
                 <p class="lead" style="margin-top:-15px;"><a href="dashboard.yml">View dashboard results as YAML</a></p>
                 <p class="lead" style="margin-top:-15px;"><a href="../index.html">Go back to Overview</a></p>
                 <h3>Error Breakdown</h3>
diff --git a/dashboard/afpo/dashboard.yml b/dashboard/afpo/dashboard.yml
index 37676fdb..dbf26b41 100644
--- a/dashboard/afpo/dashboard.yml
+++ b/dashboard/afpo/dashboard.yml
@@ -3,7 +3,7 @@ base_prefixes:
 - AFPO
 - AFPOALT
 changed: true
-date: 2023-12-04 13:13:12.345844
+date: 2023-12-11 13:13:49.257864
 metrics:
   'Axioms: Breakdown of axiom types':
     AnnotationAssertion: 6994
diff --git a/dashboard/analysis.html b/dashboard/analysis.html
index eb671bee..224c26c1 100644
--- a/dashboard/analysis.html
+++ b/dashboard/analysis.html
@@ -14620,7 +14620,7 @@ <h1 id="OBO-Foundry-dashboard-analysis">OBO Foundry dashboard analysis<a class="
 <div class="jp-OutputArea-child">
 
 <div class="jp-RenderedText jp-OutputArea-output" data-mime-type="application/vnd.jupyter.stderr">
-<pre>/tmp/ipykernel_608/4293058459.py:21: FutureWarning:
+<pre>/tmp/ipykernel_605/4293058459.py:21: FutureWarning:
 
 The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.
 
@@ -14718,9 +14718,9 @@ <h1 id="OBO-Foundry-dashboard-analysis">OBO Foundry dashboard analysis<a class="
 
 
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       <th>AnnotationAssertion</th>
       <td>4</td>
-      <td>7380.50</td>
-      <td>9903.248440</td>
+      <td>7535.75</td>
+      <td>10199.016566</td>
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       <td>3820.5</td>
-      <td>10622.75</td>
-      <td>21509.0</td>
+      <td>10778.00</td>
+      <td>22130.0</td>
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     <tr>
       <th>Declaration</th>
       <td>4</td>
-      <td>680.00</td>
-      <td>839.537174</td>
+      <td>681.50</td>
+      <td>842.474728</td>
       <td>115.0</td>
       <td>167.50</td>
       <td>346.0</td>
-      <td>858.50</td>
-      <td>1913.0</td>
+      <td>860.00</td>
+      <td>1919.0</td>
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     <tr>
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     <tr>
       <th>SubAnnotationPropertyOf</th>
       <td>2</td>
-      <td>7.25</td>
-      <td>8.616844</td>
+      <td>8.25</td>
+      <td>10.210289</td>
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       <td>0.00</td>
       <td>6.0</td>
-      <td>13.25</td>
-      <td>17.0</td>
+      <td>14.25</td>
+      <td>21.0</td>
     </tr>
     <tr>
       <th>TransitiveObjectProperty</th>
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diff --git a/dashboard/carolio/dashboard.html b/dashboard/carolio/dashboard.html
index 3d80c108..0286ad58 100644
--- a/dashboard/carolio/dashboard.html
+++ b/dashboard/carolio/dashboard.html
@@ -9,7 +9,7 @@
             <div class="col-md-8">
                 <h1>Dashboard Report - <a href="http://obofoundry.org/ontology/carolio.html">carolio</a></h1>
                 <p class="lead"><b>Version</b>: http://purl.obolibrary.org/obo/2023-08-25/carolio.owl</p>
-                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-04 13:13:08.813217</p>
+                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-11 13:13:44.143324</p>
                 <p class="lead" style="margin-top:-15px;"><a href="dashboard.yml">View dashboard results as YAML</a></p>
                 <p class="lead" style="margin-top:-15px;"><a href="../index.html">Go back to Overview</a></p>
                 <h3>Error Breakdown</h3>
diff --git a/dashboard/carolio/dashboard.yml b/dashboard/carolio/dashboard.yml
index 687dfefd..34edc74c 100644
--- a/dashboard/carolio/dashboard.yml
+++ b/dashboard/carolio/dashboard.yml
@@ -3,7 +3,7 @@ base_prefixes:
 - CAROLIO
 - CAROLIOALT
 changed: true
-date: 2023-12-04 13:13:08.813217
+date: 2023-12-11 13:13:44.143324
 metrics:
   'Axioms: Breakdown of axiom types':
     AnnotationAssertion: 647
diff --git a/dashboard/dashboard-results.yml b/dashboard/dashboard-results.yml
index 0d7bb31d..e7d6ad84 100644
--- a/dashboard/dashboard-results.yml
+++ b/dashboard/dashboard-results.yml
@@ -29,7 +29,7 @@ ontologies:
   - AFPO
   - AFPOALT
   changed: true
-  date: 2023-12-04 13:13:12.345844
+  date: 2023-12-11 13:13:49.257864
   metrics:
     'Axioms: Breakdown of axiom types':
       AnnotationAssertion: 6994
@@ -116,7 +116,7 @@ ontologies:
   - CAROLIO
   - CAROLIOALT
   changed: true
-  date: 2023-12-04 13:13:08.813217
+  date: 2023-12-11 13:13:44.143324
   metrics:
     'Axioms: Breakdown of axiom types':
       AnnotationAssertion: 647
@@ -231,7 +231,7 @@ ontologies:
   - GNDO
   - GNDOALT
   changed: true
-  date: 2023-12-04 13:12:46.064049
+  date: 2023-12-11 13:13:20.326261
   metrics:
     'Axioms: Breakdown of axiom types':
       AnnotationAssertion: 372
@@ -322,13 +322,13 @@ ontologies:
   - OCCO
   - OCCOALT
   changed: true
-  date: 2023-12-04 13:13:04.791642
+  date: 2023-12-11 13:13:39.834329
   metrics:
     'Axioms: Breakdown of axiom types':
-      AnnotationAssertion: 21509
+      AnnotationAssertion: 22130
       AnnotationPropertyRangeOf: 1
       ClassAssertion: 19
-      Declaration: 1913
+      Declaration: 1919
       DifferentIndividuals: 2
       DisjointClasses: 21
       EquivalentClasses: 9
@@ -339,14 +339,14 @@ ontologies:
       ObjectPropertyDomain: 14
       ObjectPropertyRange: 15
       Rule: 4
-      SubAnnotationPropertyOf: 17
+      SubAnnotationPropertyOf: 21
       SubClassOf: 12680
       SubObjectPropertyOf: 10
       SubPropertyChainOf: 2
       TransitiveObjectProperty: 4
-    'Axioms: Number of axioms': 36237
+    'Axioms: Number of axioms': 36868
     'Entities: % of entities reused': 100.0
-    'Entities: Number of annotation properties': 90
+    'Entities: Number of annotation properties': 96
     'Entities: Number of classes': 1774
     'Entities: Number of data properties': 1
     'Entities: Number of individuals': 20
@@ -373,20 +373,20 @@ ontologies:
     'Info: Syntax': RDF/XML Syntax
     'Info: Usage of namespaces in axioms':
       BFO: 289
-      IAO: 8990
+      IAO: 9002
       NCBITaxon: 3
-      OMO: 28
+      OMO: 34
       OMRSE: 16
       RO: 113
-      dc: 26
+      dc: 32
       dc11: 36
       foaf: 2
-      obo: 46742
-      oboInOwl: 27
+      obo: 47143
+      oboInOwl: 231
       owl: 10
       prefix_unknown: 1
       rdf: 2
-      rdfs: 1981
+      rdfs: 1987
       xsd: 929
     'Info: Which ontologies use it?': []
   mirror_from: https://raw.githubusercontent.com/Occupation-Ontology/OccO/main/occo.owl
@@ -404,7 +404,7 @@ ontologies:
     FP05 Scope:
       status: PASS
     FP06 Textual Definitions:
-      comment: 583 missing definitions. See ROBOT Report for details.
+      comment: 585 missing definitions. See ROBOT Report for details.
       status: WARN
     FP07 Relations:
       comment: 3 non-RO properties used.
@@ -424,14 +424,14 @@ ontologies:
     FP20 Responsiveness:
       status: PASS
     ROBOT Report:
-      comment: 1110 warnings, 0 info messages.
+      comment: 1112 warnings, 0 info messages.
       file: robot_report
       results:
         ERROR: 0
         INFO: 0
-        WARN: 1110
+        WARN: 1112
       status: WARN
-  sha256_hash: 6a8fddfe2b198965a787b4e06ce9cf460bc1371c109b194bb0b0cfb40d108e82
+  sha256_hash: cd6a8d55e6b31cae31a8c0cea01eb09e01be7ec1ba1baf6546eaa3b8b1ad72fb
   summary:
     comment: 2 errors
     status: ERROR
@@ -439,4 +439,4 @@ ontologies:
       ERROR: 2
       INFO: 1
       WARN: 2
-  version: http://purl.obolibrary.org/obo/occo/2023-10-02/occo.owl
+  version: http://purl.obolibrary.org/obo/occo/2023-12-09/occo.owl
diff --git a/dashboard/gndo/dashboard.html b/dashboard/gndo/dashboard.html
index 0d7f840b..0c5007dd 100644
--- a/dashboard/gndo/dashboard.html
+++ b/dashboard/gndo/dashboard.html
@@ -9,7 +9,7 @@
             <div class="col-md-8">
                 <h1>Dashboard Report - <a href="http://obofoundry.org/ontology/gndo.html">gndo</a></h1>
                 <p class="lead"><b>Version</b>: http://purl.obolibrary.org/obo/gndo/releases/2023-05-18/gndo.owl</p>
-                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-04 13:12:46.064049</p>
+                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-11 13:13:20.326261</p>
                 <p class="lead" style="margin-top:-15px;"><a href="dashboard.yml">View dashboard results as YAML</a></p>
                 <p class="lead" style="margin-top:-15px;"><a href="../index.html">Go back to Overview</a></p>
                 <h3>Error Breakdown</h3>
diff --git a/dashboard/gndo/dashboard.yml b/dashboard/gndo/dashboard.yml
index 38f5c544..dfc84e94 100644
--- a/dashboard/gndo/dashboard.yml
+++ b/dashboard/gndo/dashboard.yml
@@ -3,7 +3,7 @@ base_prefixes:
 - GNDO
 - GNDOALT
 changed: true
-date: 2023-12-04 13:12:46.064049
+date: 2023-12-11 13:13:20.326261
 metrics:
   'Axioms: Breakdown of axiom types':
     AnnotationAssertion: 372
diff --git a/dashboard/index.html b/dashboard/index.html
index b199f2e3..f44ea638 100644
--- a/dashboard/index.html
+++ b/dashboard/index.html
@@ -1,5 +1,5 @@
 <head>
-  <title>OBO Dashboard: New Ontology Requests (2023-12-04)</title>
+  <title>OBO Dashboard: New Ontology Requests (2023-12-11)</title>
   <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.4.1/css/bootstrap.min.css" integrity="sha384-Vkoo8x4CGsO3+Hhxv8T/Q5PaXtkKtu6ug5TOeNV6gBiFeWPGFN9MuhOf23Q9Ifjh" crossorigin="anonymous">
   <style>
 body {
@@ -38,7 +38,7 @@
 </script>
 </head>
 <body>
-  <h1>OBO Dashboard: New Ontology Requests (2023-12-04)</h1>
+  <h1>OBO Dashboard: New Ontology Requests (2023-12-11)</h1>
   <h4>Dashboard for checking new ontology requests to the OBO Foundry. Under construction. <a href="about.html">Learn More!</a></h4>
   <p>Created with <a href="http://robot.obolibrary.org/">ROBOT version 1.9.0</a> and <a href="https://github.com/OBOFoundry/OBO-Dashboard/commit/5668930e7dd310bf4309ae2f6c06a0453e3d2f0c">OBO Metadata Schema</a>.</p>
   <p>A very basic analysis of the results can be found <a href="analysis.html">here</a>.</p>
@@ -583,7 +583,7 @@ <h4>Dashboard for checking new ontology requests to the OBO Foundry. Under const
                         
                         
                     
-                    <td class="check table-warning"><img src="assets/warning.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="583 missing definitions. See ROBOT Report for details."></td>
+                    <td class="check table-warning"><img src="assets/warning.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="585 missing definitions. See ROBOT Report for details."></td>
                 
             
                 
@@ -655,7 +655,7 @@ <h4>Dashboard for checking new ontology requests to the OBO Foundry. Under const
                         
                         
                     
-                    <td class="check table-warning"><img src="assets/warning.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="1110 warnings, 0 info messages."></td>
+                    <td class="check table-warning"><img src="assets/warning.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="1112 warnings, 0 info messages."></td>
                 
             
             
diff --git a/dashboard/occo/dashboard.html b/dashboard/occo/dashboard.html
index 636b8287..255fed00 100644
--- a/dashboard/occo/dashboard.html
+++ b/dashboard/occo/dashboard.html
@@ -8,8 +8,8 @@
             <div class="col-md-2"></div>
             <div class="col-md-8">
                 <h1>Dashboard Report - <a href="http://obofoundry.org/ontology/occo.html">occo</a></h1>
-                <p class="lead"><b>Version</b>: http://purl.obolibrary.org/obo/occo/2023-10-02/occo.owl</p>
-                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-04 13:13:04.791642</p>
+                <p class="lead"><b>Version</b>: http://purl.obolibrary.org/obo/occo/2023-12-09/occo.owl</p>
+                <p class="lead" style="margin-top:-15px;"><b>Date run</b>: 2023-12-11 13:13:39.834329</p>
                 <p class="lead" style="margin-top:-15px;"><a href="dashboard.yml">View dashboard results as YAML</a></p>
                 <p class="lead" style="margin-top:-15px;"><a href="../index.html">Go back to Overview</a></p>
                 <h3>Error Breakdown</h3>
@@ -144,7 +144,7 @@ <h3>Error Breakdown</h3>
                                 <img src="../assets/warning.svg" height="15px">
                             </td>
                             
-                                <td>583 missing definitions. See ROBOT Report for details.</td>
+                                <td>585 missing definitions. See ROBOT Report for details.</td>
                             
                             
                                 <td></td>
@@ -304,7 +304,7 @@ <h3>Error Breakdown</h3>
                                 <img src="../assets/warning.svg" height="15px">
                             </td>
                             
-                                <td>1110 warnings, 0 info messages.</td>
+                                <td>1112 warnings, 0 info messages.</td>
                             
                             
                                 <td><a href="robot_report.html">View Report</a></td>
@@ -330,13 +330,13 @@ <h3>Ontology metrics</h3>
                                     <td>
                                         <ul>
                                             
-                                                <li>AnnotationAssertion: 21509</li>
+                                                <li>AnnotationAssertion: 22130</li>
                                             
                                                 <li>AnnotationPropertyRangeOf: 1</li>
                                             
                                                 <li>ClassAssertion: 19</li>
                                             
-                                                <li>Declaration: 1913</li>
+                                                <li>Declaration: 1919</li>
                                             
                                                 <li>DifferentIndividuals: 2</li>
                                             
@@ -358,7 +358,7 @@ <h3>Ontology metrics</h3>
                                             
                                                 <li>Rule: 4</li>
                                             
-                                                <li>SubAnnotationPropertyOf: 17</li>
+                                                <li>SubAnnotationPropertyOf: 21</li>
                                             
                                                 <li>SubClassOf: 12680</li>
                                             
@@ -377,7 +377,7 @@ <h3>Ontology metrics</h3>
                                 <td>Axioms: Number of axioms</td>
                                 
                                 
-                                    <td>36237</td>
+                                    <td>36868</td>
                                 
                             </tr>
                         
@@ -393,7 +393,7 @@ <h3>Ontology metrics</h3>
                                 <td>Entities: Number of annotation properties</td>
                                 
                                 
-                                    <td>90</td>
+                                    <td>96</td>
                                 
                             </tr>
                         
@@ -534,25 +534,25 @@ <h3>Ontology metrics</h3>
                                             
                                                 <li>BFO: 289</li>
                                             
-                                                <li>IAO: 8990</li>
+                                                <li>IAO: 9002</li>
                                             
                                                 <li>NCBITaxon: 3</li>
                                             
-                                                <li>OMO: 28</li>
+                                                <li>OMO: 34</li>
                                             
                                                 <li>OMRSE: 16</li>
                                             
                                                 <li>RO: 113</li>
                                             
-                                                <li>dc: 26</li>
+                                                <li>dc: 32</li>
                                             
                                                 <li>dc11: 36</li>
                                             
                                                 <li>foaf: 2</li>
                                             
-                                                <li>obo: 46742</li>
+                                                <li>obo: 47143</li>
                                             
-                                                <li>oboInOwl: 27</li>
+                                                <li>oboInOwl: 231</li>
                                             
                                                 <li>owl: 10</li>
                                             
@@ -560,7 +560,7 @@ <h3>Ontology metrics</h3>
                                             
                                                 <li>rdf: 2</li>
                                             
-                                                <li>rdfs: 1981</li>
+                                                <li>rdfs: 1987</li>
                                             
                                                 <li>xsd: 929</li>
                                             
diff --git a/dashboard/occo/dashboard.yml b/dashboard/occo/dashboard.yml
index b5b84143..259ccd31 100644
--- a/dashboard/occo/dashboard.yml
+++ b/dashboard/occo/dashboard.yml
@@ -3,13 +3,13 @@ base_prefixes:
 - OCCO
 - OCCOALT
 changed: true
-date: 2023-12-04 13:13:04.791642
+date: 2023-12-11 13:13:39.834329
 metrics:
   'Axioms: Breakdown of axiom types':
-    AnnotationAssertion: 21509
+    AnnotationAssertion: 22130
     AnnotationPropertyRangeOf: 1
     ClassAssertion: 19
-    Declaration: 1913
+    Declaration: 1919
     DifferentIndividuals: 2
     DisjointClasses: 21
     EquivalentClasses: 9
@@ -20,14 +20,14 @@ metrics:
     ObjectPropertyDomain: 14
     ObjectPropertyRange: 15
     Rule: 4
-    SubAnnotationPropertyOf: 17
+    SubAnnotationPropertyOf: 21
     SubClassOf: 12680
     SubObjectPropertyOf: 10
     SubPropertyChainOf: 2
     TransitiveObjectProperty: 4
-  'Axioms: Number of axioms': 36237
+  'Axioms: Number of axioms': 36868
   'Entities: % of entities reused': 100.0
-  'Entities: Number of annotation properties': 90
+  'Entities: Number of annotation properties': 96
   'Entities: Number of classes': 1774
   'Entities: Number of data properties': 1
   'Entities: Number of individuals': 20
@@ -54,20 +54,20 @@ metrics:
   'Info: Syntax': RDF/XML Syntax
   'Info: Usage of namespaces in axioms':
     BFO: 289
-    IAO: 8990
+    IAO: 9002
     NCBITaxon: 3
-    OMO: 28
+    OMO: 34
     OMRSE: 16
     RO: 113
-    dc: 26
+    dc: 32
     dc11: 36
     foaf: 2
-    obo: 46742
-    oboInOwl: 27
+    obo: 47143
+    oboInOwl: 231
     owl: 10
     prefix_unknown: 1
     rdf: 2
-    rdfs: 1981
+    rdfs: 1987
     xsd: 929
   'Info: Which ontologies use it?': []
 mirror_from: https://raw.githubusercontent.com/Occupation-Ontology/OccO/main/occo.owl
@@ -85,7 +85,7 @@ results:
   FP05 Scope:
     status: PASS
   FP06 Textual Definitions:
-    comment: 583 missing definitions. See ROBOT Report for details.
+    comment: 585 missing definitions. See ROBOT Report for details.
     status: WARN
   FP07 Relations:
     comment: 3 non-RO properties used.
@@ -105,14 +105,14 @@ results:
   FP20 Responsiveness:
     status: PASS
   ROBOT Report:
-    comment: 1110 warnings, 0 info messages.
+    comment: 1112 warnings, 0 info messages.
     file: robot_report
     results:
       ERROR: 0
       INFO: 0
-      WARN: 1110
+      WARN: 1112
     status: WARN
-sha256_hash: 6a8fddfe2b198965a787b4e06ce9cf460bc1371c109b194bb0b0cfb40d108e82
+sha256_hash: cd6a8d55e6b31cae31a8c0cea01eb09e01be7ec1ba1baf6546eaa3b8b1ad72fb
 summary:
   comment: 2 errors
   status: ERROR
@@ -120,4 +120,4 @@ summary:
     ERROR: 2
     INFO: 1
     WARN: 2
-version: http://purl.obolibrary.org/obo/occo/2023-10-02/occo.owl
+version: http://purl.obolibrary.org/obo/occo/2023-12-09/occo.owl
diff --git a/dashboard/occo/robot_report.html b/dashboard/occo/robot_report.html
index 1b028eb3..3f08b672 100644
--- a/dashboard/occo/robot_report.html
+++ b/dashboard/occo/robot_report.html
@@ -12,7 +12,7 @@ <h3>Types of errors</h3>
       <div class="report_summary"><table class="table">
       <tr><th><b>Level</b></th><th><b>Number of errors</b></th></tr>
       
-      <tr><td>WARN</td><td>1110</td></tr>
+      <tr><td>WARN</td><td>1112</td></tr>
       
       </table></div>
       <h3>Error breakdown</h3>
@@ -25,7 +25,7 @@ <h3>Error breakdown</h3>
       
       <tr><td>equivalent_class_axiom_no_genus</td><td>1</td></tr>
       
-      <tr><td>missing_definition</td><td>583</td></tr>
+      <tr><td>missing_definition</td><td>585</td></tr>
       
       </table></div>
       <p style="text-align:center; margin-top:-15px;">