diff --git a/src/ontology/cob-edit.owl b/src/ontology/cob-edit.owl index 1956d34..76824ec 100644 --- a/src/ontology/cob-edit.owl +++ b/src/ontology/cob-edit.owl @@ -9,7 +9,8 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" - xmlns:terms="http://purl.org/dc/terms/"> + xmlns:terms="http://purl.org/dc/terms/" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob/cob-edit.owl"> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/cob/cob-annotations.owl"/> <dc:description xml:lang="en">COB brings together key terms from a wide range of OBO projects to improve interoperability.</dc:description> @@ -50,6 +51,18 @@ + <!-- http://purl.obolibrary.org/obo/IAO_0000119 --> + + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/> + + + + <!-- http://purl.org/dc/elements/1.1/creator --> + + <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/> + + + <!-- http://purl.org/dc/elements/1.1/description --> <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/> @@ -68,6 +81,12 @@ + <!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym --> + + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/> + + + <!-- http://www.w3.org/2004/02/skos/core#exactMatch --> <owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#exactMatch"/> @@ -1347,6 +1366,58 @@ <obo:IAO_0000115>A process during which an organism comes into contact with another entity.</obo:IAO_0000115> <rdfs:label xml:lang="en">exposure of organism</rdfs:label> </owl:Class> + + + + <!-- http://purl.obolibrary.org/obo/COB_0001100 --> + + <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0001100"> + <owl:equivalentClass> + <owl:Class> + <owl:unionOf rdf:parseType="Collection"> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/COB_0001101"/> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/COB_0001102"/> + </owl:unionOf> + </owl:Class> + </owl:equivalentClass> + <rdfs:comment>This class groups the two defined classes "disease" and "disorder". It supports use cases that conflate the two classes for pragmatic reasons.</rdfs:comment> + <rdfs:label xml:lang="en">disease or disorder</rdfs:label> + <rdfs:seeAlso rdf:resource="https://github.com/OBOFoundry/COB/pull/226"/> + <rdfs:seeAlso>https://github.com/OBOFoundry/COB/issues/19</rdfs:seeAlso> + </owl:Class> + + + + <!-- http://purl.obolibrary.org/obo/COB_0001101 --> + + <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0001101"> + <obo:IAO_0000115>A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</obo:IAO_0000115> + <dc:creator rdf:resource="https://orcid.org/0000-0002-7356-1779"/> + <oboInOwl:hasRelatedSynonym>disorder</oboInOwl:hasRelatedSynonym> + <rdfs:label xml:lang="en">disease</rdfs:label> + </owl:Class> + <owl:Axiom> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0001101"/> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + <owl:annotatedTarget>A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</owl:annotatedTarget> + <obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/> + </owl:Axiom> + + + + <!-- http://purl.obolibrary.org/obo/COB_0001102 --> + + <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0001102"> + <obo:IAO_0000115>A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.</obo:IAO_0000115> + <dc:creator rdf:resource="https://orcid.org/0000-0002-7356-1779"/> + <rdfs:label xml:lang="en">disorder</rdfs:label> + </owl:Class> + <owl:Axiom> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0001102"/> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + <owl:annotatedTarget>A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.</owl:annotatedTarget> + <obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/> + </owl:Axiom> </rdf:RDF>