v0.4.2

Documentation

• Update dependencies (784ea63)
• Update dependencies (cbf1fc6)
• Change background of logo (de267ed)
• Update readme (e97dbf1)
• Modify scAR_logo (1f6e890)
• Update logo (18b51e7)

Performance

• Add a setup_anndata method (#54) (923b1e5)
• Change sparsity to 1 for scCRISPR-seq and cell indexing (d4b2c3d)

v0.4.1

What's Changed

Feature

• inference: add a round_to_int parameter to round the counts (float) for easy interpretation and better integration into other methods (#47) (902a2b9) (8694239)

Build

• setup: replace setup.py with setup.cfg and pyproject.toml (#51) (3dc999a)

Chore

• unittest: refactor unittest (#51) (a597c5f)
• main: refactor device (#51) (d807404)

Documentation

• readthedocs: add scAR_logo image (#51) (c34f362)
• tutorials: add ci=None to speed up plotting (#51) (902a2b9)

Contributor

@CaibinSh and @mdmanurung

Full Changelog: v0.4.0...v0.4.1

v0.4.0

Feature

• scar.model: Addition of a sparsity parameter (#44) (0c30046)
• scar.main: Introduce a sparsity parameter (cd33fdd)

Documentation

• Modify Changlog.md (deb920c)

v0.3.5

Documentation

• Delete API.rst (497b080)
• Update documentations (5ad9986)
• Update documentations (11fa2b8)

v0.3.4

fix a bug in setup:

importing modules of scar in setup introduces problem. Change it back to exec(open("scar/main/version.py").read())

v0.3.3

Fix

• *: Changelog (b9171a3)
• *: Changelog (44a4409)

Documentation

• Autodoc command line interface (0efae6c)

v0.3.2

v0.3.2

v0.3.1

Fix

• *: Addition of semantic releasing (6e83c3d)

v0.3.0

What's Changed

• Implementation of readthedocs documentation. Tutorials, installations and API are available.
• Code refactoring

Renaming module names, e.g. changing "scAR" -> "scar"
Renaming parameter names, e.g.

"scRNAseq_tech" -> "feature_type"
"model" -> "count_model"
"empty_profile" -> "ambient_profile"
...

• Black and Pylint re-formatting the code

• New release by @CaibinSh in #26

Contributor

@CaibinSh @fgypas @mr-nvs @Tobias-Ternent

Full Changelog: v0.2.3...v0.3.0

v0.2.3

• Add integration test
• Black formating
• Bump version to 0.2.3

Contributors: @fgypas , @mr-nvs and @CaibinSh

What's Changed

• Develop by @CaibinSh in #19

Full Changelog: v0.2.2...v0.2.3