DESCRIPTION

Package: chraw
Title: Analysis of chromatin and multi-omics datasets
Version: 1.0.0
Authors@R: 
    person("Sebastian", "Steinhauser", email = "sebastian.steinhauser@novartis.com", role = "aut")
    person("Christian", "Kolter", email = "christian.kolter@novartis.com", role = "aut")
    person("Ricardo","Rosa Junior", email="ricardo.rosa@hc.fm.usp.br", role = "aut")
    person("Alejandro", "Reyes", email = "alejandro.reyes_quiroz@novartis.com", role = c("aut", "cre"))
Description: The package analyzes chromatin and multi-omic experiments. 
    It extends the MultiAssayExperiment object and builds a ChrawExperiment object from ENCODE’s output. 
    It performs QC plotting, identifies differential events and other functionalities. 
    More details in package vignettes.
Suggests: 
    testthat (>= 3.0.0), magick, knitr, BiocStyle, rmarkdown, AnnotationHub, BSgenome.Hsapiens.UCSC.hg38, 
    TxDb.Hsapiens.UCSC.hg38.refGene, org.Hs.eg.db, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene,
    BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn6, org.Rn.eg.db, TxDb.Rnorvegicus.UCSC.rn6.refGene
Imports: Rsamtools, GenomicRanges, AnnotationDbi,
    BiocGenerics, BiocParallel, BSgenome, ChIPpeakAnno, rlang,
    ChIPseeker, circlize, ComplexHeatmap, cowplot, csaw,
    DESeq2, genomation, GenomicFeatures, ggplot2, IRanges,
    jsonlite, magrittr, matrixStats, random, methods, ensembldb,
    Rsubread, rtracklayer, S4Vectors, GenomicAlignments, txdbmaker
VignetteBuilder: knitr
Depends: MultiAssayExperiment
License: MIT + file LICENSE
LazyData: true
LazyDataCompression: xz
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1