forked from usegalaxy-eu/usegalaxy-eu-tools
-
Notifications
You must be signed in to change notification settings - Fork 0
/
bgruening.yaml.lock
795 lines (795 loc) · 15.5 KB
/
bgruening.yaml.lock
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: mafft
owner: rnateam
revisions:
- bcfce5aac49c
- f0d493f8f84f
- f1a5908ea2cb
tool_panel_section_label: Multiple Alignments
- name: plotly_ml_performance_plots
owner: bgruening
revisions:
- 4fac53da862f
- 62e3a4e8c54c
- 85da91bbdbfb
tool_panel_section_label: Graph/Display Data
- name: plotly_regression_performance_plots
owner: bgruening
revisions:
- 0800a1b66bbd
- 389227fa1864
tool_panel_section_label: Graph/Display Data
- name: pandas_rolling_window
owner: bgruening
revisions:
- a06f7b5c4dc7
tool_panel_section_label: Statistics
- name: split_file_to_collection
owner: bgruening
revisions:
- 2ddc36385d7a
- 6cbe2f30c2d7
- 750c1684d47c
- d150ac3d853d
- e77b954f0da5
tool_panel_section_label: Collection Operations
- name: graphicsmagick_image_convert
owner: bgruening
revisions:
- 4e9a3745dce4
- 57e2503e6039
- 627e8b38f24f
- c01226f0d828
- e88f1111d9e7
- eb09d7e6d727
tool_panel_section_label: Convert Formats
- name: glimmer_glimmer_to_gff
owner: bgruening
revisions:
- 891b330ffd94
tool_panel_section_label: Convert Formats
- name: graphicsmagick_image_montage
owner: bgruening
revisions:
- 190b3bcc00aa
- 39881709807e
- 4dada93ef525
- 7e2ee5f43778
tool_panel_section_label: Convert Formats
- name: sklearn_svm_classifier
owner: bgruening
revisions:
- 02d2be90dedb
- 14fa42b095c4
- 153f237ddb36
- 1a9d5a8fff12
- 295c383c3282
- 2df8f5c30edc
- 372582a7a34d
- 4ed102b922cb
- 73d2ef652879
- 7d7379dfef8b
- 9295c5f34630
- a5665e1b06b0
- d2afc87db26b
- da0a22cdcce7
- e1b37bdc5fbd
- f458724cc317
- f9639b488779
tool_panel_section_label: Machine Learning
- name: sklearn_train_test_eval
owner: bgruening
revisions:
- 10e2498ef07b
- 1b68acd5ac08
- 20bb2a45f922
- 2b8406e74f9e
- 443471b0a27a
- 68aaa903052a
- a9e0b963b7bb
- bde62c243b7e
- bf2bcf7bd617
- caf7d2b71a48
- cc49634df38f
- e03a58b31c12
- e23cfe4be9d4
tool_panel_section_label: Machine Learning
- name: model_prediction
owner: bgruening
revisions:
- 1552b8cb4a94
- 1e088aa741eb
- 22f9cbcf1582
- 60c726f5cc5e
- 65820fb7257b
- 6efb9bc6bf32
- 83228baae3c5
- 919198d656dd
- af7ed4d45619
- b237f27a8afc
- ce00f1cccb03
- db511406350a
- fb1fa391189e
tool_panel_section_label: Machine Learning
- name: keras_batch_models
owner: bgruening
revisions:
- 000a3868885b
- 0a7f2b9e1fcb
- 0dc3027df8f4
- 3814a92c1416
- 4a5266c96889
- 508ce0649bec
- 62b85c8ad8fa
- 68eb154fa0c6
- 77c04469e8b8
- 7f6079deac6f
- 9afec58b2bf9
- ed4d31f47d65
- f5e7df4f7975
tool_panel_section_label: Machine Learning
- name: keras_model_builder
owner: bgruening
revisions:
- 053570bac5ea
- 1f0c955fabc7
- 4bd0bd2add7f
- 5b35833076f0
- 5f39cff2a372
- 65571555c486
- 818896cd2213
- 8611b3f52a38
- 9b6faa256f15
- c51571d0a0b1
- e3b420d0b71a
- ed7c222e47e3
tool_panel_section_label: Machine Learning
- name: keras_model_config
owner: bgruening
revisions:
- 0c933465d70e
- 0fd7d8e90e2a
- 1046cf73236b
- 1f1fc37cfb42
- 2a853a2d2e72
- 2b8d85927742
- 2d8478144bb2
- 64bbfa592868
- 94d91334c787
- bedbda03c573
- c3813c64d678
- de19ef9ff031
- e474e701d58b
tool_panel_section_label: Machine Learning
- name: sklearn_sample_generator
owner: bgruening
revisions:
- 0ba38603a0d6
- 0f460421b212
- 1fe020b2108f
- 4ba68dd788b3
- 52ea044c667f
- 6b14fe097541
- 7068b5fcd623
- 86a086d2bbed
- 871db13f0b04
- 97b467e06354
- 999e07f0a9fa
- ab2c393080f9
- b4ba9602a36e
- db7eb7302fc9
- df579b31311d
- e6f4d3d9058c
- ebf295f2faf6
tool_panel_section_label: Machine Learning
- name: sklearn_estimator_attributes
owner: bgruening
revisions:
- 07843f917990
- 2ad4c2798be7
- 375bbd555f4a
- 5ae00d2908f2
- 74de84506e74
- 7a64b9f39a46
- 7a9a9349eb42
- 84ddbf61e107
- 867caa39eaa4
- 89deaf399ff7
- ad297a5397a0
- bd27a211182a
- c411ff569a26
- c9ddd20d25d0
- f4a7c3aa1e10
tool_panel_section_label: Machine Learning
- name: sklearn_stacking_ensemble_models
owner: bgruening
revisions:
- 0e20520a63ee
- 22560cf810b8
- 253b3aaf0d91
- 2b679bb676be
- 3dc6734056e6
- 59f53bbe6ba9
- 6717e5cc4d05
- a2e4a45c6083
- ae4b593c99f8
- b78007bf1cb8
- b8378d4791b7
- d25127d5f4e0
- fb424213e9dd
- fcc5eaaec401
tool_panel_section_label: Machine Learning
- name: sklearn_searchcv
owner: bgruening
revisions:
- 103aaea17119
- 1ae5dfd5ac17
- 1c4a241bef5c
- 21d3e08b1a48
- 25ab6b4e376e
- 3d5b2491c62b
- 4368259ff821
- 4af699d766e4
- 586e68c83df2
- 68753d45815f
- 82b6104d4682
- 907bb0418c9f
- a36a45cb96fa
- c1ca24a1509d
- c6ae57f774c6
- e5a5ad882f1f
- f0d2e8a3c575
tool_panel_section_label: Machine Learning
- name: sklearn_build_pipeline
owner: bgruening
revisions:
- 019bd8289224
- 0c74d3164ac8
- 3f25f37ee3db
- 3f3c6dc38f3e
- 653be9c354ec
- 664666bd14ec
- 6d056a1b2249
- 7388ffedf12c
- 775b004b7920
- 840f29aad145
- 913ee94945f3
- 97dce66fe158
- 99038af8deda
- 9c3e1d3235c8
- 9ddacd0b8c8b
- aef56d0e7a61
- c33145a815ee
tool_panel_section_label: Machine Learning
- name: sklearn_pairwise_metrics
owner: bgruening
revisions:
- 09bfbef3dd90
- 1682b64aad9e
- 20b7295ae6e9
- 226524df8c6c
- 2a1afd3481ce
- 62945303e6bd
- 7366e5108e9f
- 8338f71ed0c4
- 86020dbc8ef7
- 96452e7461f4
- a61375e306c1
- bc17040617c0
- bd9481c0af38
- cd4328a02798
- d2da602b05cb
- e84c0db80565
- f24deab884d0
tool_panel_section_label: Machine Learning
- name: sklearn_nn_classifier
owner: bgruening
revisions:
- 23fb598a09d7
- 309cc7c6af56
- 34d31bd995e9
- 39ae3c043096
- 4cc980df6265
- 55c7d3e58eae
- 699024d5c451
- 823ecc0bce45
- 9871a634540f
- aa83e7e3c398
- c030e4bb1b39
- cd02bf168d23
- d0efc68a3ddb
- e9ba818e7877
- ed7b1654e841
- fa2d8618bab0
- fbc38059bb8f
tool_panel_section_label: Machine Learning
- name: sklearn_numeric_clustering
owner: bgruening
revisions:
- 1dd433d2c92c
- 27903ce9b4be
- 2d7c60aa6c62
- 37e193b3fdd7
- 4bbaf77573ef
- 6edcaa8dbb9f
- 73e7f1c76ece
- 772db6f8bc24
- 83938131dd46
- 9d234733ccfd
- 9ff214ce6ec2
- abb5a3f256e3
- ad7e0b4291ee
- e13a7c05b3a4
- e7f047a9dca9
- ff955d4fc5b1
tool_panel_section_label: Machine Learning
- name: sklearn_ensemble
owner: bgruening
revisions:
- 172365bc2b5f
- 1a53edc4b438
- 360330a867f0
- 39ae276e75d9
- 3ab7af14f1b5
- 407495139a09
- 47d4baa183b2
- 4ecc0ce9d0a2
- 53616c8b0865
- 841a6cc5fc58
- a98fdfcd9f5f
- ab4249158912
- af0523c606a7
- d868914bce73
- dde0f1654d18
- e94395c672bd
- f4d8a82e167c
tool_panel_section_label: Machine Learning
- name: sklearn_feature_selection
owner: bgruening
revisions:
- 07b34d5284f6
- 0b88494bdcac
- 1d20e0dce176
- 231e9a9849e8
- 2bbbac61e48d
- 4170e2bda73d
- 41b109e70a7f
- 5773e98921fc
- 58322d3c7bd3
- 6d21b03e00a1
- 8a307b946c58
- a7c667ff83fe
- ae0fafb53c1d
- c2cd3219543a
- e918f33f7d4f
- ec25331946b8
- fe47a06943fb
tool_panel_section_label: Machine Learning
- name: sklearn_data_preprocess
owner: bgruening
revisions:
- 1b5cd2d16fb1
- 1bef885255e0
- 484a98c44f00
- 4952fe39b61d
- 4fc54bac4254
- 50b3e080cef0
- 66df2aa6cd6b
- 685046e0381a
- 826c3e68e7a9
- 9ac0b78c6b6d
- 9e43ee712723
- add3c3a7c2b4
- b75cae00f980
- c72131b8fc7a
- d6b8103c909c
- eb79bde99328
- eb9da067ab26
tool_panel_section_label: Machine Learning
- name: sklearn_clf_metrics
owner: bgruening
revisions:
- 3cd0dbc038ec
- 40e31fb88836
- 44f0ce9488fb
- 55703205546f
- 5621f2be9fbc
- 5a21a631d2eb
- 68afcd163b3d
- 9728636c1e41
- 9bf11bbeccc3
- a7067bbf1e58
- adc6137e7c73
- ae69f6918abe
- c8547d3993c0
- c89a3bfb3b1d
- daaa56720686
- e54382561bd4
- e8ded63c3fa8
tool_panel_section_label: Machine Learning
- name: sklearn_regression_metrics
owner: bgruening
revisions:
- 146133e04fbc
- 1e98dbb8d5bc
- 203b2ade8097
- 268ecaf96b68
- 28d51b976c29
- 3703b5796442
- 3badea963c3b
- 40ee30b5e456
- 6000c1589f33
- 649017be1c60
- 64c87ceb6766
- 70c5a9127f99
- 7acb9b46c066
- 7d98dfb04d27
- 9c8ede554b7c
- a152c1d23379
- f04a2405f3fe
tool_panel_section_label: Machine Learning
- name: sklearn_discriminant_classifier
owner: bgruening
revisions:
- 18b39ada6f35
- 1bd039aca44f
- 1d2bcebc8678
- 237ae72d58a3
- 2d032cff49eb
- 3e2921875c58
- 420a4bf99244
- 5552eda109bd
- 64b771b1471a
- 75bcb7c19fcf
- 7696d389675c
- 78a60f884ac9
- 8e49f26b14d3
- 95d0f81e46e8
- 9bb505eafac9
- d3e99d3df1ca
- e76f6dfea5c9
tool_panel_section_label: Machine Learning
- name: sklearn_generalized_linear
owner: bgruening
revisions:
- 2fc89dcd41c8
- 3e4a7684d402
- 40f4447733b2
- 616a241c5b37
- 63417d0acc72
- 67881a837f46
- 6cf4b82c72bc
- 913bf1c4c7bb
- 91c4e3331208
- 9d3a024cf2da
- a8c7b9fa426c
- a9474cdda506
- b628de0d101f
- bf32512b1418
- c9969328b42f
- e3bc646e63b2
- f12dc92b6699
tool_panel_section_label: Machine Learning
- name: sklearn_model_validation
owner: bgruening
revisions:
- 0474777be433
- 492d34a75de6
- 4b359039f09f
- 56f6ebf69ddc
- 5895fe0b8bde
- 60b8a683ba99
- 65f18ab91132
- 805194c3cdfb
- 86e1e2874460
- 887e0aaa482e
- 95b04e086576
- a5aed87b2cc0
- be4f389a95d9
- bfc7bdfcb423
- cf9aa11b91c8
- de360b57a5ab
- efbec977a47d
tool_panel_section_label: Machine Learning
- name: sklearn_fitted_model_eval
owner: bgruening
revisions:
- 044729657181
- 2e69c6de354e
- 4a1cd790e323
- 61fb99c55558
- c2a7717d96ce
- c374098d4f5c
- cf54bae8ad42
- da9f0b8ca61c
- e00c1c9d206b
- eaddff553324
tool_panel_section_label: Machine Learning
- name: sklearn_model_fit
owner: bgruening
revisions:
- 17999807dc1b
- 1c25f305db70
- 49525d37843a
- 5dc03d8e137e
- 5dd3f77a2257
- 734c66aa945a
- 8861ece0b66f
- fb17e19b62a4
- fc2e64a27e90
- fe4e36598917
tool_panel_section_label: Machine Learning
- name: sklearn_train_test_split
owner: bgruening
revisions:
- 03611d7232f6
- 0985b0dd6f1a
- 13b9ac5d277c
- 145208b3579d
- 3312fb686ffb
- 376dd641af44
- 5a092779412e
- 910ebff96ddc
- ce2fd1edbc6e
- e8639f65c883
tool_panel_section_label: Machine Learning
- name: sklearn_lightgbm
owner: bgruening
revisions:
- 74f96ebc5554
- 9b70bf3306e5
- a459c68692ca
- aff86cee673c
- c12485d058aa
- c48ffc96fe79
tool_panel_section_label: Machine Learning
- name: sklearn_pca
owner: bgruening
revisions:
- 24c1cc2dd4a4
- 2d7016b3ae92
- 435592ba3087
- caf164dd0e18
- e36ab18cbaca
tool_panel_section_label: Machine Learning
- name: ml_visualization_ex
owner: bgruening
revisions:
- 05143043ca13
- 09efff9a5765
- 14bd6d59650d
- 222c02df5d55
- 4a229a7ad638
- 6b94d76a1397
- 72c0d2747dc9
- 947c2eacccb8
- c7655b5a94af
- dd13740e8fdc
- e88c782a127d
- f96efab83b65
tool_panel_section_label: Machine Learning
- name: keras_train_and_eval
owner: bgruening
revisions:
- 03f61bb3ca43
- 470aed90aa41
- 785dd890e27d
- 8ddb3557710d
- b6ef6d0cb6b7
- ccd6269fad60
- ead8f1822587
- f1b9a42d6809
tool_panel_section_label: Machine Learning
- name: scipy_sparse
owner: bgruening
revisions:
- 102c8bae2e9c
- 1658dff33c46
- 201b4f13b374
- 27c0b1a050df
- 2a32d1d9c8da
- 318484f56b6a
- 648b81bca7c5
- 92e09b827300
- a2da4cebc584
- a84e6ffd3735
- b9ed7b774ba3
- d0ed8e976b79
- e6893a4bcb7b
- eb3091b4ee4b
- ecd247e1ea9c
- f49aad8f79ea
tool_panel_section_label: Statistics
- name: nanopolish_variants
owner: bgruening
revisions:
- 639b3a5bb415
- 63af3144371a
- a3afc5f0a96c
- bc79b5b0fe04
- de5b3d8f5b90
- f1cb13497323
tool_panel_section_label: Nanopore
- name: nanopolish_methylation
owner: bgruening
revisions:
- 02e3c674d917
- 07cf146e8964
- 12efe2f03697
- a8d4be409446
- be95355fef8d
- f9dadc362197
tool_panel_section_label: Nanopore
- name: nanopolish_eventalign
owner: bgruening
revisions:
- 0938217b3221
- 5c360c46eac7
- 85a394edc247
- 8fdb079ddaf0
- bee42f615f28
- d219b6d8158a
tool_panel_section_label: Nanopore
- name: nanopolish_polya
owner: bgruening
revisions:
- 449e9aeded2d
- 7739a9b0dd83
- be717b65851f
- d376944466bf
tool_panel_section_label: Nanopore
- name: racon
owner: bgruening
revisions:
- 39bed8de8017
- 51fd3136069d
- 7c847ec300b8
- a199cd7ac344
- aa39b19ca11e
- cd06929b224b
- d865b62f501c
tool_panel_section_label: Assembly
- name: flye
owner: bgruening
revisions:
- 1ce9b1d72ec3
- 276f5d8712d5
- 3ee0ef312022
- 8d4f03b5fe9d
- cd256484eb1a
- de24438c9988
- e27815e82dd4
tool_panel_section_label: Assembly
- name: mitohifi
owner: bgruening
revisions:
- f6065bc6e428
tool_panel_section_label: Assembly
- name: tgsgapcloser
owner: bgruening
revisions:
- 86fa46d3ce2e
tool_panel_section_label: Assembly
- name: graphmap_overlap
owner: bgruening
revisions:
- d0a712cf0518
tool_panel_section_label: Mapping
- name: graphmap_align
owner: bgruening
revisions:
- 190175f4e143
tool_panel_section_label: Mapping
- name: create_tool_recommendation_model
owner: bgruening
revisions:
- 12764915e1c5
- 4f7e6612906b
- 5b3c08710e47
- 76251d1ccdcc
- 9bf25dbe00ad
- afec8c595124
tool_panel_section_label: Statistics
- name: replace_column_by_key_value_file
owner: bgruening
revisions:
- d533e4b75800
tool_panel_section_label: Text Manipulation
- name: diff
owner: bgruening
revisions:
- 02dfbbf869d8
- 156d0908e232
- 95a9dc82fc9a
tool_panel_section_label: Text Manipulation
- name: add_line_to_file
owner: bgruening
revisions:
- 8e251055b1a9
tool_panel_section_label: Text Manipulation
- name: sklearn_to_categorical
owner: bgruening
revisions:
- 59e8b4328c82
- 612ca26c197d
- ec69cbe34b73
- f93f0cdbaf18
tool_panel_section_label: Machine Learning
- name: fastq_info
owner: bgruening
revisions:
- 7a821cd57b43
tool_panel_section_label: Quality Control
- name: trim_galore
owner: bgruening
revisions:
- cd7e644cae1d
tool_panel_section_label: FASTA/FASTQ
- name: gfastats
owner: bgruening
revisions:
- 2b8b4cacb83d
- 5799092ffdff
- 8ccbf07a5433
- ad1149b4f795
tool_panel_section_label: FASTA/FASTQ
- name: music_compare
owner: bgruening
revisions:
- 10bf0f89035f
- 4447ed460308
tool_panel_section_label: Single-cell
- name: music_manipulate_eset
owner: bgruening
revisions:
- 22232092be53
tool_panel_section_label: Single-cell
- name: music_inspect_eset
owner: bgruening
revisions:
- 2fed32b5aa02
- 577435e5e6b2
- 7705cc75ac18
- 817eb707bbf4
- 8c64a2da3869
tool_panel_section_label: Single-cell
- name: music_deconvolution
owner: bgruening
revisions:
- 2ba99a52bd44
- 56371b5a2da9
tool_panel_section_label: Single-cell
- name: music_construct_eset
owner: bgruening
revisions:
- 282819d09a4f
- 2cfd0db49bbc
- 7902cd31b9b5
- 7ffaa0968da3
- be91cb6f48e7
tool_panel_section_label: Single-cell
- name: pharmcat
owner: bgruening
revisions:
- 891283e0ee89
- d67642a21a1d
tool_panel_section_label: Variant Calling
- name: itsx
owner: bgruening
revisions:
- 2cbd0d66aa08
tool_panel_section_label: Metagenomic Analysis
- name: antismash
owner: bgruening
revisions:
- bc88856eddab
- e78e25d3b4bd
tool_panel_section_label: Annotation
- name: 10x_bamtofastq
owner: bgruening
revisions:
- f71fd828c126
tool_panel_section_label: Single-cell