packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2022},
  url = {https://www.R-project.org/},
}

@Manual{R-bcdata,
  title = {bcdata: Search and Retrieve Data from the BC Data Catalogue},
  author = {Andy Teucher and Sam Albers and Stephanie Hazlitt},
  year = {2023},
  note = {R package version 0.4.0},
  url = {https://CRAN.R-project.org/package=bcdata},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 0.32},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-citr,
  title = {citr: RStudio Add-in to Insert Markdown Citations},
  author = {Frederik Aust},
  year = {2019},
  note = {R package version 0.3.2},
  url = {https://github.com/crsh/citr},
}

@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2023},
  note = {R package version 1.14.8},
  url = {https://CRAN.R-project.org/package=data.table},
}

@Manual{R-datapasta,
  title = {datapasta: R Tools for Data Copy-Pasta},
  author = {Miles McBain and Jonathan Carroll and Sharla Gelfand and Suthira Owlarn and Garrick Aden-Buie},
  year = {2020},
  note = {R package version 3.1.0},
  url = {https://github.com/milesmcbain/datapasta},
}

@Manual{R-DBI,
  title = {DBI: R Database Interface},
  author = {{R Special Interest Group on Databases (R-SIG-DB)} and Hadley Wickham and Kirill Müller},
  year = {2022},
  note = {R package version 1.1.3},
  url = {https://CRAN.R-project.org/package=DBI},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.0},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-fishbc,
  title = {fishbc: Fishes of British Columbia},
  author = {Evan Amies-Galonski and Joe Thorley and Nadine Hussein},
  year = {2023},
  note = {R package version 0.2.1.9000},
  url = {https://github.com/poissonconsulting/fishbc},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-fpr,
  title = {fpr: Fish Passage Reporting Functions},
  author = {Al Irvine},
  year = {2022},
  note = {R package version 1.0.2.9000},
  url = {https://github.com/NewGraphEnvironment/fpr},
}

@Manual{R-fwapgr,
  title = {fwapgr: Client for BC Freshwater Atlas fwapg API},
  author = {Sebastian Dalgarno and Joe Thorley},
  year = {2023},
  note = {R package version 0.1.0.9013},
  url = {https://github.com/poissonconsulting/fwapgr},
}

@Manual{R-geojsonio,
  title = {geojsonio: Convert Data from and to GeoJSON or TopoJSON},
  author = {Scott Chamberlain and Andy Teucher and Michael Mahoney},
  year = {2022},
  note = {R package version 0.10.0},
  url = {https://CRAN.R-project.org/package=geojsonio},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2023},
  note = {R package version 3.4.1},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-httr,
  title = {httr: Tools for Working with URLs and HTTP},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.4.5},
  url = {https://CRAN.R-project.org/package=httr},
}

@Manual{R-janitor,
  title = {janitor: Simple Tools for Examining and Cleaning Dirty Data},
  author = {Sam Firke},
  year = {2023},
  note = {R package version 2.2.0},
  url = {https://CRAN.R-project.org/package=janitor},
}

@Manual{R-jpeg,
  title = {jpeg: Read and write JPEG images},
  author = {Simon Urbanek},
  year = {2022},
  note = {R package version 0.1-10},
  url = {https://www.rforge.net/jpeg/},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
  author = {Hao Zhu},
  year = {2021},
  note = {R package version 1.3.4},
  url = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 1.42},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lubridate,
  title = {lubridate: Make Dealing with Dates a Little Easier},
  author = {Vitalie Spinu and Garrett Grolemund and Hadley Wickham},
  year = {2023},
  note = {R package version 1.9.2},
  url = {https://CRAN.R-project.org/package=lubridate},
}

@Manual{R-magick,
  title = {magick: Advanced Graphics and Image-Processing in R},
  author = {Jeroen Ooms},
  year = {2021},
  note = {R package version 2.7.3},
  url = {https://CRAN.R-project.org/package=magick},
}

@Manual{R-pagedown,
  title = {pagedown: Paginate the HTML Output of R Markdown with CSS for Print},
  author = {Yihui Xie and Romain Lesur and Brent Thorne and Xianying Tan},
  year = {2023},
  note = {R package version 0.20.1},
  url = {https://github.com/rstudio/pagedown},
}

@Manual{R-poisspatial,
  title = {poisspatial: Spatial Functions},
  author = {Joe Thorley and Seb Dalgarno},
  year = {2023},
  note = {R package version 0.1.0.9000},
  url = {https://github.com/poissonconsulting/poisspatial},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Hadley Wickham and Lionel Henry},
  year = {2023},
  note = {R package version 1.0.1},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2023},
  note = {R package version 2.1.4},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-readxl,
  title = {readxl: Read Excel Files},
  author = {Hadley Wickham and Jennifer Bryan},
  year = {2023},
  note = {R package version 1.4.2},
  url = {https://CRAN.R-project.org/package=readxl},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2023},
  note = {R package version 2.20},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-RPostgres,
  title = {RPostgres: Rcpp Interface to PostgreSQL},
  author = {Hadley Wickham and Jeroen Ooms and Kirill Müller},
  year = {2023},
  note = {R package version 1.4.5},
  url = {https://CRAN.R-project.org/package=RPostgres},
}

@Manual{R-RPostgreSQL,
  title = {RPostgreSQL: R Interface to the PostgreSQL Database System},
  author = {Joe Conway and Dirk Eddelbuettel and Tomoaki Nishiyama and Sameer Kumar Prayaga and Neil Tiffin},
  year = {2023},
  note = {R package version 0.7-5},
  url = {https://CRAN.R-project.org/package=RPostgreSQL},
}

@Manual{R-sf,
  title = {sf: Simple Features for R},
  author = {Edzer Pebesma},
  year = {2022},
  note = {R package version 1.0-9},
  url = {https://CRAN.R-project.org/package=sf},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2022},
  note = {R package version 1.5.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2022},
  note = {R package version 3.1.8},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2023},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 2.0.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-xlsx,
  title = {xlsx: Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files},
  author = {Adrian Dragulescu and Cole Arendt},
  year = {2020},
  note = {R package version 0.6.5},
  url = {https://github.com/colearendt/xlsx},
}

@Article{bcdata2021,
  doi = {10.21105/joss.02927},
  year = {2021},
  publisher = {The Open Journal},
  volume = {6},
  number = {61},
  pages = {2927},
  author = {Andrew C. Teucher and Sam J. Albers and Stephanie L. Hazlitt},
  title = {bcdata: An R package for searching and retrieving data from the B.C. Data Catalogue},
  journal = {Journal of Open Source Software},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Article{lubridate2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {https://www.jstatsoft.org/v40/i03/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{sf2018,
  author = {Edzer Pebesma},
  title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
  year = {2018},
  journal = {{The R Journal}},
  doi = {10.32614/RJ-2018-009},
  url = {https://doi.org/10.32614/RJ-2018-009},
  pages = {439--446},
  volume = {10},
  number = {1},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}