v1.3.0

What's Changed

• Added translate_cell function by @lej0hn in #367
• Annotations: completes exporting and extraction of annotations that we use in NeuroML by @sanjayankur31 in #354
• chore: improve contributing documentation by @sanjayankur31 in #371
• Feat/get ks channel states by @sanjayankur31 in #373
• Feat/plotting checks by @sanjayankur31 in #374
• issue 303: plot spikes by @sanjayankur31 in #377
• Feat/make generate plot clicky by @sanjayankur31 in #382
• chore: linter fixes by @sanjayankur31 in #383
• Feat/coverage by @sanjayankur31 in #386
• ci: add coverage to pull requests by @sanjayankur31 in #387
• Add bqbiol.is by @sanjayankur31 in #390
• ci: update comment bit to also work on PRs from forks by @sanjayankur31 in #391
• Use jnml jar 0.13.1; fixes to allow for cells with external morphology/biophysicalProperties by @pgleeson in #392

New Contributors

• @lej0hn made their first contribution in #367

Full Changelog: v1.2.14...v1.3.0

v1.2.14

Full Changelog: v1.2.13...v1.2.14

• bugfix: adds progressbar as a default dependency

v1.2.13

What's Changed

• feat(annotations): improve for use as embedded annotations by @sanjayankur31 in #350
• More annotation tweaks: remove unused ids, use rdf:li by @sanjayankur31 in #353
• fix(nml-channel-analysis): include ionChannelVShift by @sanjayankur31 in #356
• Updates to xpp running/plotting by @pgleeson in #355
• feat(rotation): allow users to pick if they want a copy by @sanjayankur31 in #361
• animate matplotlib plots by @YBCS in #348
• Feat/test animate plots by @sanjayankur31 in #365
• feat(pynml-modchananalysis): add labels and fix file name by @sanjayankur31 in #352
• Better handling of nested if statements in xpp parser by @pgleeson in #368

Full Changelog: v1.2.12...v1.2.13

v1.2.12

What's Changed

• feat(annotations): extend to allow both miriam and biosimulations styles by @sanjayankur31 in #349

Full Changelog: v1.2.11...v1.2.12

v1.2.11

What's Changed

• feat(optional-deps): add warnings to inform users of optional packages by @sanjayankur31 in #346

Full Changelog: v1.2.10...v1.2.11

v1.2.10

What's Changed

• Minor fixes and tests for XPP export; to v1.2.10 by @pgleeson in #343
• feat(annotations): add wrapper to write annotations by @sanjayankur31 in #339
• chore: move to ruff by @sanjayankur31 in #345
• creating and sending omex archives to biosimulations by @sanjayankur31 in #344

Full Changelog: v1.2.9...v1.2.10

v1.2.9

What's Changed

• feat: split vispy into qt5 and qt6 deps by @sanjayankur31 in #314
• Feat/issue 321: add a parallel runner by @sanjayankur31 in #325
• add -swc in pynml by @YBCS in #326
• feat(LEMSSimulation): allow using float/str for duration/dt by @sanjayankur31 in #332
• figures generated by pynml-modchananalysis are saved by default by @YBCS in #327
• pynml-archive: add -sedml by @sanjayankur31 in #335
• Initial version of pynml-xpp, for parsing XPP files and converting to LEMS by @pgleeson in #338

New Contributors

• @YBCS made their first contribution in #326

Full Changelog: v1.2.7...v1.2.9

v1.2.7

What's Changed

• To v1.2.7 and some updates to -run-tellurium by @pgleeson in #312

Full Changelog: v1.2.5...v1.2.7

v1.2.5

What's Changed

• plot-timeseries: expose option in cli to allow saving plot to a file by @sanjayankur31 in #311

Full Changelog: v1.2.4...v1.2.5

v1.2.4

What's Changed

• Feat/ run tellurium by @pgleeson in #305
• To v1.2.4; include pyneuroml.utils.misc in pynml imports by @pgleeson in #310

Full Changelog: v1.2.2...v1.2.4