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Describe the bug
When using the plot_interactive_3D function from pyneuroml.plot.PlotMorphologyVispy, the window that pops up contains a snapshot of the neuron that is not interactive. I can use the R button to rotate the 3D model, but any mouse input does not work.
To Reproduce
I used the following code to try and plot a neuroml file of choice:
from pyneuroml.plot.PlotMorphologyVispy import plot_interactive_3D
plot_interactive_3D("example.cell.nml")
Expected behavior
I expected an interactive window to pop up, in which I could use mouse movements to rotate and zoom into the 3D model of the neuron to investigate its morphology.
Observed behavior
Only the R button seemed to work in the interactive window. Any mouse movement did not result in an output.
System information:
OS: Windows 11
Python version: Python 3.11.9
Version of tools in use (pynml --help)
Package Version
I can reproduce this on a windows 11 machine, but I haven't a clue how to debug it. There are no errors, no warnings, no output at all, so I don't even know where to start currently :(
sanjayankur31
changed the title
[Bug] VisPy interactive plotting malfunction
[Bug] pynml-plotmorph: vispy: no mouse events
May 13, 2024
Describe the bug
When using the plot_interactive_3D function from pyneuroml.plot.PlotMorphologyVispy, the window that pops up contains a snapshot of the neuron that is not interactive. I can use the R button to rotate the 3D model, but any mouse input does not work.
To Reproduce
I used the following code to try and plot a neuroml file of choice:
from pyneuroml.plot.PlotMorphologyVispy import plot_interactive_3D
plot_interactive_3D("example.cell.nml")
Expected behavior
I expected an interactive window to pop up, in which I could use mouse movements to rotate and zoom into the 3D model of the neuron to investigate its morphology.
Observed behavior
Only the R button seemed to work in the interactive window. Any mouse movement did not result in an output.
System information:
pynml --help
)Package Version
airspeed 0.6.0
asttokens 2.4.0
attrs 23.2.0
backcall 0.2.0
blosc2 2.6.2
cachetools 5.3.3
cattrs 23.2.3
colorama 0.4.6
comm 0.1.4
contourpy 1.2.1
cycler 0.12.1
debugpy 1.8.0
decorator 5.1.1
dill 0.3.8
dnspython 2.6.1
docstring_parser 0.16
executing 1.2.0
fonttools 4.51.0
freetype-py 2.4.0
graphviz 0.20.3
h5py 3.11.0
hsluv 5.0.4
ipykernel 6.25.2
ipython 8.15.0
jedi 0.19.0
jupyter_client 8.3.1
jupyter_core 5.3.1
kiwisolver 1.4.5
libNeuroML 0.5.8
lxml 5.2.2
matplotlib 3.8.4
matplotlib-inline 0.1.6
matplotlib-scalebar 0.8.1
modelspec 0.3.4
mpmath 1.3.0
msgpack 1.0.8
natsort 8.4.0
ndindex 1.8
nest-asyncio 1.5.7
networkx 3.3
neuromllite 0.5.9
numexpr 2.10.0
numpy 1.26.4
packaging 23.1
parso 0.8.3
pickleshare 0.7.5
pillow 10.3.0
pip 24.0
platformdirs 3.10.0
ppft 1.7.6.8
progressbar 2.5
progressbar2 4.4.2
prompt-toolkit 3.0.39
psutil 5.9.5
pure-eval 0.2.2
py-cpuinfo 9.0.0
Pygments 2.16.1
PyLEMS 0.6.7
pymongo 4.7.2
pyNeuroML 1.2.12
PyOpenGL 3.1.7
PyOpenGL-accelerate 3.1.7
pyparsing 3.1.2
PyQt6 6.7.0
PyQt6-Qt6 6.7.0
PyQt6-sip 13.6.0
python-dateutil 2.8.2
python-utils 3.8.2
pywin32 306
PyYAML 6.0.1
pyzmq 25.1.1
scipy 1.13.0
setuptools 69.5.1
six 1.16.0
stack-data 0.6.2
sympy 1.12
tables 3.9.2
tabulate 0.9.0
tornado 6.3.3
traitlets 5.9.0
typing_extensions 4.11.0
vispy 0.14.2
wcwidth 0.2.6
wheel 0.43.0
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