While compiling pyferret error

[DevenderRaju]

Hello,

Can anybody help me with the below error.

Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 21 at (1)
/usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/PyFerret/fer/common -I/root/PyFerret/fer/grdel -I/root/PyFerret/fer/cferbind -I/root/PyFerret/fer/ccr -I/root/PyFerret/fmt/cmn -I/root/PyFerret/ppl/include -I/root/PyFerret/ppl/tmap_inc -I/root/PyFerret/pyfermod -I/root/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include/cairo -I/usr/lib64/../include -I/usr/lib64/../include/pango-1.0 -I/usr/lib64/../include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c strmar.F -o strmar.o
/usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/PyFerret/fer/common -I/root/PyFerret/fer/grdel -I/root/PyFerret/fer/cferbind -I/root/PyFerret/fer/ccr -I/root/PyFerret/fmt/cmn -I/root/PyFerret/ppl/include -I/root/PyFerret/ppl/tmap_inc -I/root/PyFerret/pyfermod -I/root/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include/cairo -I/usr/lib64/../include -I/usr/lib64/../include/pango-1.0 -I/usr/lib64/../include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c upnsquish.F -o upnsquish.o
upnsquish.F:73:23:

73 | x char(iand('DF'x,ichar(instr(i:i))))
| 1
Error: BOZ constant at (1) uses nonstandard postfix syntax [see ‘-fno-allow-invalid-boz’]
make[4]: *** [Makefile:25: upnsquish.o] Error 1

regards,
Raju

[ACManke]

Hi Raju, There will be several Warning messages if you look through all of the compiler outputs.  These point out older constructs in the Fortran code, some of which is quite old.  I believe that these warnings such as the one about a DO loop can safely be ignored. What operating system and compiler are you using? I use gfortran/ gcc version 9.4.0 under Ubuntu and I do not see the error you are seeing. I do not know what this error message means, but the flag that is mentioned, -fno-allow-invalid-boz is not listed in the suggested flags in the platform_specific_flags files in the source code for PyFerret. I see "-fallow-invalid-boz" in the flags file platform_specific.mk.intel-mac.  You might try adding that flag to the lists given by FFLAGS and PPLUS_FFLAGS in your platform_specific file.

…

On 9/21/2022 2:28 AM, DevenderRaju wrote: Hello, Can anybody help me with the below error. Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 21 at (1) /usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/PyFerret/fer/common -I/root/PyFerret/fer/grdel -I/root/PyFerret/fer/cferbind -I/root/PyFerret/fer/ccr -I/root/PyFerret/fmt/cmn -I/root/PyFerret/ppl/include -I/root/PyFerret/ppl/tmap_inc -I/root/PyFerret/pyfermod -I/root/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include/cairo -I/usr/lib64/../include -I/usr/lib64/../include/pango-1.0 -I/usr/lib64/../include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c strmar.F -o strmar.o /usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/PyFerret/fer/common -I/root/PyFerret/fer/grdel -I/root/PyFerret/fer/cferbind -I/root/PyFerret/fer/ccr -I/root/PyFerret/fmt/cmn -I/root/PyFerret/ppl/include -I/root/PyFerret/ppl/tmap_inc -I/root/PyFerret/pyfermod -I/root/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include/cairo -I/usr/lib64/../include -I/usr/lib64/../include/pango-1.0 -I/usr/lib64/../include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c upnsquish.F -o upnsquish.o upnsquish.F:73:23: 73 | x char(iand('DF'x,ichar(instr(i:i)))) | 1 Error: BOZ constant at (1) uses nonstandard postfix syntax [see ‘-fno-allow-invalid-boz’] make[4]: *** [Makefile:25: upnsquish.o] Error 1 regards, Raju — Reply to this email directly, view it on GitHub <#125>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AOZLFOOV6RMBKIHQBNQDY4DV7LIMNANCNFSM6AAAAAAQR35PQE>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[DevenderRaju]

Dear Support, I am using CentOS 9 with gfortran/ gcc 11 version. Regards, Raju Get Outlook for Android<https://aka.ms/AAb9ysg>

________________________________ From: ACManke ***@***.***> Sent: Thursday, September 22, 2022 6:57:26 AM To: NOAA-PMEL/PyFerret ***@***.***> Cc: Raju Devender ***@***.***>; Author ***@***.***> Subject: Re: [NOAA-PMEL/PyFerret] While compiling pyferret error (Issue #125) Hi Raju, There will be several Warning messages if you look through all of the compiler outputs. These point out older constructs in the Fortran code, some of which is quite old. I believe that these warnings such as the one about a DO loop can safely be ignored. What operating system and compiler are you using? I use gfortran/ gcc version 9.4.0 under Ubuntu and I do not see the error you are seeing. I do not know what this error message means, but the flag that is mentioned, -fno-allow-invalid-boz is not listed in the suggested flags in the platform_specific_flags files in the source code for PyFerret. I see "-fallow-invalid-boz" in the flags file platform_specific.mk.intel-mac. You might try adding that flag to the lists given by FFLAGS and PPLUS_FFLAGS in your platform_specific file.

On 9/21/2022 2:28 AM, DevenderRaju wrote: Hello, Can anybody help me with the below error. Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 21 at (1) /usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/PyFerret/fer/common -I/root/PyFerret/fer/grdel -I/root/PyFerret/fer/cferbind -I/root/PyFerret/fer/ccr -I/root/PyFerret/fmt/cmn -I/root/PyFerret/ppl/include -I/root/PyFerret/ppl/tmap_inc -I/root/PyFerret/pyfermod -I/root/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include/cairo -I/usr/lib64/../include -I/usr/lib64/../include/pango-1.0 -I/usr/lib64/../include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c strmar.F -o strmar.o /usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/PyFerret/fer/common -I/root/PyFerret/fer/grdel -I/root/PyFerret/fer/cferbind -I/root/PyFerret/fer/ccr -I/root/PyFerret/fmt/cmn -I/root/PyFerret/ppl/include -I/root/PyFerret/ppl/tmap_inc -I/root/PyFerret/pyfermod -I/root/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/lib64/../include/cairo -I/usr/lib64/../include -I/usr/lib64/../include/pango-1.0 -I/usr/lib64/../include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c upnsquish.F -o upnsquish.o upnsquish.F:73:23: 73 | x char(iand('DF'x,ichar(instr(i:i)))) | 1 Error: BOZ constant at (1) uses nonstandard postfix syntax [see ‘-fno-allow-invalid-boz’] make[4]: *** [Makefile:25: upnsquish.o] Error 1 regards, Raju — Reply to this email directly, view it on GitHub <#125>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AOZLFOOV6RMBKIHQBNQDY4DV7LIMNANCNFSM6AAAAAAQR35PQE>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

— Reply to this email directly, view it on GitHub<#125 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AXQ4AIBMGCMUAHOWWZAFXDLV7OYX5ANCNFSM6AAAAAAQR35PQE>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[ACManke]

The code in the routine "ppl/tmapadds/upnsquish.F" uses out-of-date function calls for changing a string to upper-case form. I have not run into build errors with this, but elsewhere in the Ferret/PyFerret code, such functionality is done with calls to the C routine str_upcase.c. I would suggest an experiment: Replace the code in your local copy with the contents of the file I will attach here:

upnsquish.F.txt

[DevenderRaju]

Hello ACManke,

I will make try after replacing the F file and let you know the status.

regards,
Raju

[DevenderRaju]

Dear ACManke,

The earlier error gone but new error came up with the below. Can you help me.

/usr/bin/gfortran -m64 -fPIC -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fno-backslash -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/git/PyFerret/fer/common -I/root/git/PyFerret/fer/grdel -I/root/git/PyFerret/fer/cferbind -I/root/git/PyFerret/fer/ccr -I/root/git/PyFerret/fmt/cmn -I/root/git/PyFerret/ppl/include -I/root/git/PyFerret/ppl/tmap_inc -I/root/git/PyFerret/pyfermod -I/root/git/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -O0 -c alphas.F -o alphas.o
alphas.F:97:19:

84 | CALL CHOUT(US,1)
| 2
......
97 | CALL CHOUT(TEKOFF,5)
| 1
Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(1)/INTEGER(4)).
make[4]: *** [Makefile:25: alphas.o] Error 1
make[4]: Leaving directory '/root/git/PyFerret/ppl/complot'
make[3]: *** [Makefile:23: all] Error 1
make[3]: Leaving directory '/root/git/PyFerret/ppl'
make[2]: *** [Makefile:107: ppl_libraries] Error 2
make[2]: Leaving directory '/root/git/PyFerret/fer'
make[1]: *** [Makefile:39: optimized] Error 2
make[1]: Leaving directory '/root/git/PyFerret/fer'
make: *** [Makefile:25: optimized] Error 2
f951: Fatal Error: alphas.F: No such file or directory

regards,
Raju

[ACManke]

Hello,
This also comes from outdated calls in some of the legacy code used by PyFerret. It is interesting that we had not run into trouble with these until now, but I think that gcc 11 has not yet been used.

I suggest that you add the flag -std=legacy. This will be placed in the platform_specific_flags file, and is needed only in the PPLUS_FLAGS section:

PPLUS_FFLAGS	= -m64 -fPIC \
		  -std=legacy  \
		  -fno-automatic \
		  -fno-second-underscore \
		  -fdollar-ok \
		  -ffixed-line-length-132 \
		  -fno-backslash \
		  $(MYDEFINES) $(MYINCLUDES)

[ACManke]

Adding some general information to this ticket. The -std option is documented here: https://gcc.gnu.org/onlinedocs/gfortran/Fortran-Dialect-Options.html

and a short discussion of -std=legacy is here: https://www.scivision.dev/gcc-gfortran-std-legacy/

The Gfortran flag -std=legacy disables warning for very out-of-date non-standard Fortran syntax that should not be used anymore. However, where you are using a legacy package where the code isn’t being changed, using -std=legacy can be necessary, particularly for Gfortran ≥ 8.

-std=legacy should not be used when developing code, but for code that is never changed, or for building but not developing PyFerret, this is fine.

[DevenderRaju]

Dear ACManke,

The previous error gone after -std=legacy in Flags. After that two more error came that i have solved, but one error below i couldn't solve. Please help me.

/usr/bin/gfortran -m64 -fPIC -std=legacy -fallow-invalid-boz -fno-automatic -fno-second-underscore -fdollar-ok -ffixed-line-length-132 -fallow-argument-mismatch -ffpe-trap=overflow -fno-backslash -fimplicit-none -fdefault-real-8 -fdefault-double-8 -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/git/PyFerret/fer/common -I/root/git/PyFerret/fer/grdel -I/root/git/PyFerret/fer/cferbind -I/root/git/PyFerret/fer/ccr -I/root/git/PyFerret/fmt/cmn -I/root/git/PyFerret/ppl/include -I/root/git/PyFerret/ppl/tmap_inc -I/root/git/PyFerret/pyfermod -I/root/git/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -O -DNDEBUG -c do_internal_gc_fcn.F -o do_internal_gc_fcn.o
do_internal_gc_fcn.F:1157:132:

1157 | . buff(:TM_LENSTR1(buff)), *5000 )
| 1
Error: Missing alternate return specifier in subroutine call at (1)
make[3]: *** [../../platform_specific.mk.x86_64-linux:133: do_internal_gc_fcn.o] Error 1
make[3]: Leaving directory '/root/git/PyFerret/fer/doo'
make[2]: *** [Makefile:117: fer_libraries] Error 1
make[2]: Leaving directory '/root/git/PyFerret/fer'
make[1]: *** [Makefile:39: optimized] Error 2
make[1]: Leaving directory '/root/git/PyFerret/fer'
make: *** [Makefile:25: optimized] Error 2

regards,
Raju

[ACManke]

Hi,
This points to a recent undiscovered bug. The compiler version you are using is more strict and so it has found this.

At the end of the file fer/doo/do_internal_gc_fcn.F there is a call to an error routine. The last few lines of this file should be as follows:

 5400   CONTINUE
	CALL ERRMSG(ferr_grid_definition, status,
     .     'Result 1-d grid too large for 4-byte integer indexing: '//
     .   fcn_name(:TM_LENSTR1(fcn_name)) //' '//
     .   buff(:TM_LENSTR1(buff)), *5000 )

	END

In the code base, there is currently a comma at the end of the line that ends with indexing, but that line should end with the characters //

If you change your copy of this routine I believe we will get beyond this error.

[DevenderRaju]

Hi ACManke,

The above error has gone after replacing the text in the F file. Now there is an error regarding the python. Below the is the error. Is Pyferret support for Version 3.9.

CCompilerOpt.generate_dispatch_header[2245] : dispatch header dir build/src.linux-x86_64-3.9/numpy/distutils/include does not exist, creating it
error: Command "gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -m64 -fPIC -Dcrptd_cat_argument -Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77 -DG77_SIGNAL -DINTERNAL_READ_FORMAT_BUG -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND -DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY -DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT -DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -I/usr/include/python3.9 -I/root/git/PyFerret/fer/common -I/root/git/PyFerret/fer/grdel -I/root/git/PyFerret/fer/cferbind -I/root/git/PyFerret/fer/ccr -I/root/git/PyFerret/fmt/cmn -I/root/git/PyFerret/ppl/include -I/root/git/PyFerret/ppl/tmap_inc -I/root/git/PyFerret/pyfermod -I/root/git/PyFerret/external_functions/ef_utility -I/usr/lib64/../include -I/usr/lib64/../include -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -DNDEBUG -O build/temp.linux-x86_64-3.9/pyfermod/copy_pystat_data.o build/temp.linux-x86_64-3.9/pyfermod/decref_pyobj.o build/temp.linux-x86_64-3.9/pyfermod/libpyferret.o build/temp.linux-x86_64-3.9/pyfermod/pyefcn_compute.o build/temp.linux-x86_64-3.9/pyfermod/pyefcn_custom_axes.o build/temp.linux-x86_64-3.9/pyfermod/pyefcn_get_error.o build/temp.linux-x86_64-3.9/pyfermod/pyefcn_init.o build/temp.linux-x86_64-3.9/pyfermod/pyefcn_result_limits.o build/temp.linux-x86_64-3.9/pyfermod/set_memory.o fer/ef_utility/ef_get_arg_type.o fer/ef_utility/ef_get_bad_flags.o fer/ef_utility/ef_get_cx_list.o fer/ef_utility/ef_get_mres.o fer/ef_utility/ef_get_mr_list.o fer/ef_utility/ef_get_one_val.o fer/ef_utility/ef_get_result_type.o fer/ef_utility/ef_put_string.o fer/ef_utility/ef_put_string_ptr.o fer/ef_utility/ef_set_alt_fcn_name_sub.o fer/ef_utility/ef_set_arg_desc_sub.o fer/ef_utility/ef_set_arg_name_sub.o fer/ef_utility/ef_set_arg_type.o fer/ef_utility/ef_set_arg_unit_sub.o fer/ef_utility/ef_set_axis_extend.o fer/ef_utility/ef_set_axis_influence.o fer/ef_utility/ef_set_axis_influence_6d.o fer/ef_utility/ef_set_axis_inheritance.o fer/ef_utility/ef_set_axis_inheritance_6d.o fer/ef_utility/ef_set_axis_limits.o fer/ef_utility/ef_set_axis_reduction.o fer/ef_utility/ef_set_axis_reduction_6d.o fer/ef_utility/ef_set_custom_axis_sub.o fer/ef_utility/ef_set_desc_sub.o fer/ef_utility/ef_set_num_args.o fer/ef_utility/ef_set_freq_axis_sub.o fer/ef_utility/ef_set_has_vari_args.o fer/ef_utility/ef_set_num_work_arrays.o fer/ef_utility/ef_set_piecemeal_ok.o fer/ef_utility/ef_set_piecemeal_ok_6d.o fer/ef_utility/ef_set_result_type.o fer/ef_utility/ef_set_work_array_dims.o fer/ef_utility/ef_set_work_array_dims_6d.o fer/ef_utility/ef_set_work_array_lens.o fer/ef_utility/ef_set_work_array_lens_6d.o fer/ef_utility/ef_version_test.o fer/ef_utility/ef_bail_out.o fer/ef_utility/ef_convert_date_string.o fer/ef_utility/ef_get_arg_info.o fer/ef_utility/ef_get_arg_mem_subscripts.o fer/ef_utility/ef_get_arg_mem_subscripts_6d.o fer/ef_utility/ef_get_arg_string.o fer/ef_utility/ef_get_arg_subscripts.o fer/ef_utility/ef_get_arg_subscripts_6d.o fer/ef_utility/ef_get_arg_ss_extremes.o fer/ef_utility/ef_get_arg_ss_extremes_6d.o fer/ef_utility/ef_get_axis_calendar.o fer/ef_utility/ef_get_axis_dates.o fer/ef_utility/ef_get_axis_info.o fer/ef_utility/ef_get_axis_info_6d.o fer/ef_utility/ef_get_axis_modulo_len.o fer/ef_utility/ef_get_box_hi_lim.o fer/ef_utility/ef_get_box_limits.o fer/ef_utility/ef_get_box_lo_lim.o fer/ef_utility/ef_get_box_size.o fer/ef_utility/ef_get_coordinates.o fer/ef_utility/ef_get_its_dsg.o fer/ef_utility/ef_get_one_arg_string.o fer/ef_utility/ef_get_one_val_sub.o fer/ef_utility/ef_get_one_val_sub_sub.o fer/ef_utility/ef_get_res_mem_subscripts.o fer/ef_utility/ef_get_res_mem_subscripts_6d.o fer/ef_utility/ef_get_res_subscripts.o fer/ef_utility/ef_get_res_subscripts_6d.o fer/ef_utility/ef_get_string_arg_element.o fer/ef_utility/ef_get_string_arg_element_6d.o fer/ef_utility/ef_get_string_arg_element_len.o fer/ef_utility/ef_get_string_arg_element_len_6d.o fer/ef_utility/ef_get_string_arg_elem_len_sub.o fer/ef_utility/ef_get_string_arg_element_sub.o fer/ef_utility/ef_get_string_arg_max_len.o fer/ef_utility/ef_get_wrk_mem_subscripts.o fer/ef_utility/ef_get_wrk_mem_subscripts_6d.o fer/ef_utility/ef_set_alt_fcn_name.o fer/ef_utility/ef_set_arg_desc.o fer/ef_utility/ef_set_arg_name.o fer/ef_utility/ef_set_arg_unit.o fer/ef_utility/ef_set_custom_axis.o fer/ef_utility/ef_set_freq_axis.o fer/ef_utility/ef_set_desc.o fer/ef_utility/ef_set_real_to_string.o fer/ef_utility/ef_get_date_tstep.o fer/special/FerMem_routines.o fer/special/fakes3.o fer/special/ferret_dispatch.o fer/special/gui_fakes.o fer/special/linux_routines.o fer/special/xmake_date_data.o fer/special/xrevision_type_data.o fer/special/xplatform_type_data.o fmt/src/tm_lenstr.o fmt/src/tm_fmt.o fmt/src/tm_lefint.o -Llib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lagg -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem -lferplt -lpyf -lrpn -lstk -lutl -lxeq -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lagg -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem -lferplt -lpyf -lrpn -lstk -lutl -lxeq -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lagg -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem -lferplt -lpyf -lrpn -lstk -lutl -lxeq -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lagg -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem -lferplt -lpyf -lrpn -lstk -lutl -lxeq -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lagg -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem -lferplt -lpyf -lrpn -lstk -lutl -lxeq -o build/lib.linux-x86_64-3.9/pyferret/libpyferret.cpython-39-x86_64-linux-gnu.so /usr/lib64/libnetcdff.a /usr/lib64/libnetcdf.a /usr/lib64/libhdf5_hl.a /usr/lib64/libhdf5.a -lcairo -lpangocairo-1.0 -lcurl -lgfortran -lz -ldl -lm -fPIC -Wl,-Bsymbolic -Wl,--exclude-libs,ALL" failed with exit status 1
make[1]: *** [Makefile:72: pymod_optimized_build] Error 1
make[1]: Leaving directory '/root/git/PyFerret'
make: *** [Makefile:26: optimized] Error 2

Regards,
Raju

[ACManke]

Hi Raju,
I am knowledgeable only about the Fortran and C in PyFerret, and about the Ferret command language. This error on the "build" step is not something I know about.

What I do under Ubuntu is to install PyFerret using the miniconda installation method. Then in my build of PyFerret from source, I use the Python and other libraries from the miniconda directory. I directed the miniconda installation to use python3.9:

> conda create -n FERRET python=3.9 -c conda-forge pyferret ferret_datasets --yes

Once the installation is complete, I set my site_specific.mk file so that all of the LIBDIR statements point to the library location under the miniconda installation. Here is part of my site_specific.mk file:

...

## =========================
## Directory containing the Cairo static libraries (v1.12 or later).
## Include files are assumed to be located in an "include" sibling directory.
## If given and not empty, the Cairo static libraries found under this directory will be used.
## If empty or not given, the system's Cairo shared libraries will be used.
## =========================
CAIRO_LIBDIR = /home/acm/miniconda3/envs/FERRET/lib

## =========================
## Directory containing the Pixman static libraries used by the above Cairo static libraries.
## Include files are assumed to be located in an "include" sibling directory.
## If given and not empty, the Pixman-1 static libraries found in this directory will be used.
## If empty or not given, the system's Pixman-1 shared library will be used.
## This value should be empty or not given if CAIRO_LIBDIR is empty or not given.
## =========================
PIXMAN_LIBDIR = /home/acm/miniconda3/envs/FERRET/lib

...

## =========================
## Location of the NetCDF libraries.
## Include files are assumed to be located in an "include" sibling directory.
## If HDF5_LIBDIR is given and not empty, the static libraries will be used
## (along with the HDF5 static libraries).
## If HDF5_LIBDIR is empty or not given, NetCDF shared libraries will be used.
## =========================
NETCDF_LIBDIR = /home/acm/miniconda3/envs/FERRET/lib

Before building PyFerret I enable the miniconda environment so that python from that environment is used in the build:

> conda activate FERRET

> make 
> make install

[DevenderRaju]

Dear ACManke, I have installed the PyFerret for the python 3.9 by using the following below steps and got success and running smoothly without the conda nor to make a build. And i thank you for your support. 1. Installing PyFerret dependencies installation (For python 3.9) centos 9 * yum install pip epel-release python3-qt5-base python3-qt5 netcdf-fortran netcdf-fortran-devel netcdf-devel netcdf * pip install --upgrade pip * pip install numpy pyshp scipy pyside2 2. Installing PyFerret * Get PyFerret file from (https://anaconda.org/conda-forge/pyferret/7.6.5/download/linux-64/pyferret-7.6.5-py39hbde9d65_1.tar.bz2). * Get Ferret Datasets file from (https://anaconda.org/conda-forge/ferret_datasets/7.6/download/linux-64/ferret_datasets-7.6-0.tar.bz2) * Make a directory in /usr/local/ferret * Move downloaded files into the folder /usr/local/ferret and extract it using command tar -xf filename. * Go to the folder bin and run ./Finstall (Give Proper paths of the folder). Mainly my purpose of the installing the PyFerret is for LAS 9 on CentOS 9. Here we are running las 8 now we want to upgrade to the las 9. Regards, Raju Devender From: ACManke ***@***.***> Sent: 15 October 2022 04:57 To: NOAA-PMEL/PyFerret ***@***.***> Cc: Raju Devender ***@***.***>; Author ***@***.***> Subject: Re: [NOAA-PMEL/PyFerret] While compiling pyferret error (Issue #125) Hi Raju, I am knowledgeable only about the Fortran and C in PyFerret, and about the Ferret command language. This error on the "build" step is not something I know about. What I do under Ubuntu is to install PyFerret using the miniconda installation method. Then in my build of PyFerret from source, I use the Python and other libraries from the miniconda directory. I directed the miniconda installation to use python3.9:

conda create -n FERRET python=3.9 -c conda-forge pyferret ferret_datasets --yes

Once the installation is complete, I set my site_specific.mk file so that all of the LIBDIR statements point to the library location under the miniconda installation. Here is part of my site_specific.mk file: ... ## ========================= ## Directory containing the Cairo static libraries (v1.12 or later). ## Include files are assumed to be located in an "include" sibling directory. ## If given and not empty, the Cairo static libraries found under this directory will be used. ## If empty or not given, the system's Cairo shared libraries will be used. ## ========================= CAIRO_LIBDIR = /home/acm/miniconda3/envs/FERRET/lib ## ========================= ## Directory containing the Pixman static libraries used by the above Cairo static libraries. ## Include files are assumed to be located in an "include" sibling directory. ## If given and not empty, the Pixman-1 static libraries found in this directory will be used. ## If empty or not given, the system's Pixman-1 shared library will be used. ## This value should be empty or not given if CAIRO_LIBDIR is empty or not given. ## ========================= PIXMAN_LIBDIR = /home/acm/miniconda3/envs/FERRET/lib ... ## ========================= ## Location of the NetCDF libraries. ## Include files are assumed to be located in an "include" sibling directory. ## If HDF5_LIBDIR is given and not empty, the static libraries will be used ## (along with the HDF5 static libraries). ## If HDF5_LIBDIR is empty or not given, NetCDF shared libraries will be used. ## ========================= NETCDF_LIBDIR = /home/acm/miniconda3/envs/FERRET/lib Before building PyFerret I enable the miniconda environment so that python from that environment is used in the build:

conda activate FERRET make make install

— Reply to this email directly, view it on GitHub<#125 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AXQ4AID5R7NHZMJNXZBTUA3WDHT4ZANCNFSM6AAAAAAQR35PQE>. You are receiving this because you authored the thread.Message ID: ***@***.***>