From 4afa25b24f6ba87f7b9c39a67a730c283417f4e4 Mon Sep 17 00:00:00 2001
From: yosufzaizb <yosufzaizb@nih.gov>
Date: Wed, 20 Mar 2024 22:20:08 +0000
Subject: [PATCH] deleted extra cells

---
 tutorial_4-methylseq2.ipynb | 24 ++----------------------
 1 file changed, 2 insertions(+), 22 deletions(-)

diff --git a/tutorial_4-methylseq2.ipynb b/tutorial_4-methylseq2.ipynb
index 60d2247..446f3bb 100644
--- a/tutorial_4-methylseq2.ipynb
+++ b/tutorial_4-methylseq2.ipynb
@@ -365,7 +365,7 @@
    },
    "outputs": [],
    "source": [
-    "! fasterq-dump --threads 4 --gz --progress SRR306435 SRR033942 -O Tutorial_4/sra_download"
+    "! fasterq-dump --threads 4 --progress SRR306435 SRR033942 -O Tutorial_4/sra_download"
    ]
   },
   {
@@ -409,26 +409,6 @@
     "!pigz Tutorial_4/sra_download/SRR*"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "ac635647-9962-42ed-bd2d-0c638332d8bc",
-   "metadata": {
-    "tags": []
-   },
-   "outputs": [],
-   "source": []
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "4873545a-43be-4390-82f1-4f5acf24eac2",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "!pigz"
-   ]
-  },
   {
    "cell_type": "markdown",
    "id": "1775f2b8-83a4-4e96-aa6b-64108377f22e",
@@ -623,7 +603,7 @@
    },
    "outputs": [],
    "source": [
-    "#use the file name listed in here\n",
+    "#use the file names listed in here\n",
     "!ls null/pipeline_info"
    ]
   },