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Computational Publishing for Archives

Quarto - How To: Install, getting started, guide

Install and getting started

https://quarto.org/docs/get-started/

They miss out that you need Python installed and Jupyter Lab and a working terminal to install them

https://www.python.org/downloads/

https://jupyter.org/install

Also install Panda: py -m pip install panda

As well as knowing what the Python prompt and escape looks like: https://stackoverflow.com/questions/41524734/how-to-exit-python-script-in-command-prompt

Docker Compose

This repository also contains Docker Compose and Dockerfiles for running the various applications in Docker containers.

Run docker-compose up -d --build to start the containers and docker-compose down to stop the containers.

The jupyterlab container runs a stand-alone version of JupyterLab on http://localhost:8888. This can be used to edit any Jupyter Notebook files in the repository. The JupyterLab instance runs with the password 'jupyterlab'.

The nginx container runs Nginx webserver and displays the static site that Quarto renders. This runs at http://localhost:1337.

The quarto container starts a Ubuntu 22.04 container, installs various things like Python, downloads Quarto and installs it, and then adds Python modules like jupyter, matplotlib, and panda. It then runs in the background so Quarto can be called on to render the qmd and ipynb files into the site/book like so:

docker exec -it quarto quarto render

There's a known issue with Quarto running in the Docker container in macOS due to the amd64 emulation of Docker Desktop for arm64 MacOS. See discussion at quarto-dev/quarto-cli#3308. This shouldn't occur in any other environment running Docker.

Create a book

https://quarto.org/docs/books/

  1. I've used the book section with Terminal Win 10 https://quarto.org/docs/books

  2. Published book to GitHub pages using the Docs route https://quarto.org/docs/publishing/github-pages.html#render-to-docs

  3. YAML _quarto.yml was modified to outpt-dir: docs

  4. GitHub pages render from /docs

  5. Download locally and in the terminal at top level of repo run quarto preview to locally view at localhost:7104 and to output run quarto render

  6. Haven't figured out yet how to add a notebook to a book and have it render mult-format to the book? First I was just getting the book to run.