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Remove/move old or unused registrations? #44

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colleenXu opened this issue Mar 10, 2021 · 2 comments
Open

Remove/move old or unused registrations? #44

colleenXu opened this issue Mar 10, 2021 · 2 comments

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@colleenXu
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Delete or move some registrations to a "deprecated" branch.

Some registrations/folders are from previous phases of Translator and may not be needed.

registered/previously-updated by Su/Wu lab:

  • automat-covid-phenotypes
  • broad-pgm
  • chembio
  • civic/jsonld_context
  • clinical_risk_factor
  • cohd
  • cord
  • ebi_ontology_lookup_service_api
  • genetics_provider
  • harmonize
  • hetio
  • hmdb
  • openfda/jsonld_context
  • pharos
  • reactome/jsonld_context
  • scibite
  • scigraph

Duplicate files?
MolePro vs molecular_data_provider

From other teams/previous phases:

  • CTD_api
  • FooDB_api
  • GTEx_api
  • GT_cmaq_exposures_api
  • GT_endotypes_api
  • GT_exposures_api
  • _example_api
  • api_catalog
  • bicluster_api
  • depmap
  • depmap_bicluster_api
  • disease ontology api
  • ebi_ontology_mapping_service_api
  • ebi_proteins
  • ebi_proteins_taxonomy
  • ensembl
  • gene_knockout_correlation
  • greent
  • hpotomondo_bicluster_api
  • indigo
  • rnaseqdb_bicluster_api
  • robokop
  • robokop_extend
  • robokop_messenger
  • rtx
@colleenXu
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After talking with Chunlei, the first step can be looking for folders that don't correspond to any current SmartAPI registration. Move these to a /attic folder.

Also don't just delete folders.

@colleenXu
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Related note: there are old open issues + PRs (pre-2020), and we could also consider what to do with those.

Overall this seems to be very low priority...

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