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Failed TranQL query - ROBOKOP or ICEES? #41

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karafecho opened this issue Oct 2, 2019 · 0 comments
Open

Failed TranQL query - ROBOKOP or ICEES? #41

karafecho opened this issue Oct 2, 2019 · 0 comments

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@karafecho
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karafecho commented Oct 2, 2019

Tyler Beck (NCATS) (and I) ran the TranQL query below earlier today. This is a query that I sent to him during the hackathon, one that worked at that point. The query runs from ICEES to ROBOKOP. Chris looked into this earlier today and thought it was a Neo4j issue (since fixed), but I don't think that's the case, as the query still doesn't return anything but ICEES output. (The original query returned nothing but an error message: “Timeout error requesting content from url: “https://tranql-backplane.renci.org/graph/gamma/quick“”) Perhaps it's the bridge between ICEES and ROBOKOP? The last AND statement is a NOT statement, correct?

SELECT population_of_individual_organisms->chemical_substance->gene->biological_process_or_activity<-disease_or_phenotypic_feature
FROM "/schema"
WHERE icees.table = 'patient'
AND icees.year = 2010
AND icees.feature.TotalEDInpatientVisits < 2
AND icees.maximum_p_value = 0.1
AND chemical_substance !=~ '^(SCTID.|rxcui.|CAS.|SMILES.|umlscui.*)$'

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