lotus_lfric.sub

#!/bin/bash
#SBATCH -p test
#SBATCH -n 6
#SBATCH -t 10
#SBATCH -o %j.log
#SBATCH -e %j.err

# Load a module for the OpenMPI library 
module load eb/OpenMPI/intel/4.1.0 intel/20.0.0

cd <base_dir>/trunk/gungho/example

#Run using containerised OpenMPI libraries
echo internal
time mpirun singularity exec <base_dir>/lfric_openmpi_env.sif ../bin/gungho configuration.nml

#Run using lotus OpenMPI libraries
echo external

export LOCAL_LD_LIBRARY_PATH="/apps/eb/software/OpenMPI/4.1.0-iccifort-2018.3.222-GCC-7.3.0-2.30/lib:\$LD_LIBRARY_PATH"
export BIND_OPT="-B /apps/eb"

time mpirun singularity exec $BIND_OPT --env=LD_LIBRARY_PATH=$LOCAL_LD_LIBRARY_PATH <base_dir>/lfric_openmpi_env.sif ../bin/gungho configuration.nml

exit