dirac_lfric.sub

#!/bin/bash
#SBATCH -J LFRic
#SBATCH -A DIRAC-DS006-CPU
#SBATCH --nodes=1
#SBATCH --ntasks=6
#SBATCH --time=00:15:00
#SBATCH -p skylake

module purge                               # Removes all modules still loaded
module load rhel7/default-peta4
module load singularity/current

export OMP_NUM_THREADS=1
export I_MPI_PIN_DOMAIN=omp:compact # Domains are $OMP_NUM_THREADS cores in size
export I_MPI_PIN_ORDER=compact #Required for speed.


cd /home/dc-wils4/lfric/trunk/gungho/example

export CONTAINER=/home/dc-wils4/lfric/lfric_env.sif
export BIND_OPT="-B /usr/local/Cluster-Apps"
export LOCAL_LD_LIBRARY_PATH="/usr/local/Cluster-Apps/intel/2017.4/compilers_and_libraries_2017.4.196/linux/mpi/intel64/lib"

mpirun -np 6 singularity exec $BIND_OPT $CONTAINER ../bin/gungho configuration.nml