main.yaml

name: main

on:
  push:
    branches-ignore:
      - "dependabot/**"
  pull_request:
    paths-ignore:
      - '**.md'

env:
  PIP_DISABLE_PIP_VERSION_CHECK: 1

concurrency:
  group: ${{ github.head_ref || github.run_id }}
  cancel-in-progress: true

jobs:
  test:
    name: test
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4
      - name: Install apt dependencies
        run: |
          sudo apt-get update -y --allow-releaseinfo-change
          sudo apt-get install --no-install-recommends -y \
            libegl1-mesa \
            libopengl0 \
            libgl1 \
            libgl1-mesa-glx 
      - uses: conda-incubator/setup-miniconda@v3
        with:
          miniforge-version: latest
          miniforge-variant: Mambaforge
          environment-file: environment.yml
          auto-update-conda: false
          python-version: "3.9"
      - name: "Install Test Framework"
        run: pip install pytest
      - name: "Install Codem"
        run: pip install .
      - name: 'Debug Info'
        run: |
          echo python location: `which python`
          echo python version: `python --version`
          echo pytest location: `which pytest`
          echo installed packages
          conda list
          pip list
      - name: "Run Tests"
        run: pytest tests -v
  lint:
    name: lint-check
    runs-on: ubuntu-latest
    steps:
    - name: Checkout repository
      uses: actions/checkout@v4
      with:
        # We must fetch at least the immediate parents so that if this is
        # a pull request then we can checkout the head.
        fetch-depth: 2
    - name: Setup Python
      uses: actions/setup-python@v5
      with:
        # Semantic version range syntax or exact version of a Python version
        python-version: '3.12'
    - name: Install Linting Tools
      run : |
        python -m pip install mypy numpy types-PyYAML typing-extensions
    - name: Run mypy
      run : mypy src
  analyze:
    name: analyze
    runs-on: ubuntu-latest
    steps:
    - name: Checkout repository
      uses: actions/checkout@v4
      with:
        # We must fetch at least the immediate parents so that if this is
        # a pull request then we can checkout the head.
        fetch-depth: 2
    - uses: conda-incubator/setup-miniconda@v3
      with:
        miniforge-version: latest
        miniforge-variant: Mambaforge
        environment-file: environment.yml
        auto-update-conda: false
        python-version: "3.12"
    # Initializes the CodeQL tools for scanning.
    - name: Initialize CodeQL
      uses: github/codeql-action/init@v3
      with:
        languages: 'python'
        # Supported options are ['csharp', 'cpp', 'go', 'java', 'javascript', 'python']
        # If you wish to specify custom queries, you can do so here or in a config file.
        # By default, queries listed here will override any specified in a config file.
        # Prefix the list here with "+" to use these queries and those in the config file.
        queries: +security-and-quality

    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
    # If this step fails, then you should remove it and run the build manually (see below)
    - name: Autobuild
      uses: github/codeql-action/autobuild@v3

    # ℹ️ Command-line programs to run using the OS shell.
    # 📚 https://git.io/JvXDl

    # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
    #    and modify them (or add more) to build your code if your project
    #    uses a compiled language

    #- run: |
    #   make bootstrap
    #   make release

    - name: Perform CodeQL Analysis
      uses: github/codeql-action/analyze@v3