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BOWTIE2_BUILD should only run when the output files don't already exist #4

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ZoePochon opened this issue Jul 9, 2024 · 0 comments · May be fixed by #6
Open

BOWTIE2_BUILD should only run when the output files don't already exist #4

ZoePochon opened this issue Jul 9, 2024 · 0 comments · May be fixed by #6
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enhancement New feature or request

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@ZoePochon
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Description of feature

The pipeline runs BOWTIE2_BUILD whether or not the output files (database indices here) already exist.
This should be modified since running bowtie2-build is compute-heavy and these large databases are generally shared between users. The BOWTIE2_BUILD rule should only get activated if the output files don't exist.
Note that this will probably be necessary for the SAMTOOLS_FAIDX step as well.

@ZoePochon ZoePochon added the enhancement New feature or request label Jul 9, 2024
@mahesh-panchal mahesh-panchal linked a pull request Jul 10, 2024 that will close this issue
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