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add CLI function to set is_shown #284

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childers opened this issue May 16, 2019 · 3 comments
Open

add CLI function to set is_shown #284

childers opened this issue May 16, 2019 · 3 comments
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@childers
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@childers
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 \d blast_blastdb 
                                   Table "public.blast_blastdb"
   Column    |          Type          |                         Modifiers                          
-------------+------------------------+------------------------------------------------------------
 id          | integer                | not null default nextval('blast_blastdb_id_seq'::regclass)
 fasta_file  | character varying(200) | not null
 title       | character varying(200) | not null
 description | text                   | not null
 is_shown    | boolean                | not null
 organism_id | integer                | not null
 type_id     | integer                | not null

hmmer

\d hmmer_hmmerdb
                                   Table "public.hmmer_hmmerdb"
   Column    |          Type          |                         Modifiers                          
-------------+------------------------+------------------------------------------------------------
 id          | integer                | not null default nextval('hmmer_hmmerdb_id_seq'::regclass)
 fasta_file  | character varying(100) | not null
 title       | character varying(200) | not null
 description | text                   | not null
 is_shown    | boolean                | not null
 organism_id | integer                | not null

@deming7h777
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which one you prefer:
python manage.py is_shown [xxxxx.fa] [xxxxx.fa][xxxxx.fa]

python manage.py blast_utility -t/-f [xxxx.fa] [xxxx.fa]

@deming7h777
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(py2.7) [vagrant@localhost genomics-workspace]$ python manage.py blast_utility GCF_000214255.1_Bter_1.0_genomic.fna Agla_Btl03082013.genome.fa GCF_001937115.1_Atum_1.0_genomic.fna --shown false 
1 species finished 
2 species finished 
3 species finished 
all done

it's the result for configure is_shown field

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