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We want to add a workflow to add a new organism and sequence files to the genomics-workspace app, as part of the organism onboarding workflow.
See also NAL-i5K/genomics-workspace#280
Steps/example commands:
python manage.py addorganism [genus] [species]
python manage.py addblast [genus] [species] -t [sequence type] -f [path to fasta file]
python manage.py blast_utility [path to fasta file] -m
python manage.py blast_utility [path to fasta file] -p
python manage.py addhmmer [genus] [species] -f [path to fasta file]
python manage.py blast_shown [path to fasta file] --shown [true/false]
The text was updated successfully, but these errors were encountered:
Added in #79, #76, and #74.
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HsiuKangHuang
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We want to add a workflow to add a new organism and sequence files to the genomics-workspace app, as part of the organism onboarding workflow.
See also NAL-i5K/genomics-workspace#280
Steps/example commands:
python manage.py addorganism [genus] [species]
python manage.py addblast [genus] [species] -t [sequence type] -f [path to fasta file]
python manage.py blast_utility [path to fasta file] -m
python manage.py blast_utility [path to fasta file] -p
python manage.py addhmmer [genus] [species] -f [path to fasta file]
python manage.py blast_shown [path to fasta file] --shown [true/false]
The text was updated successfully, but these errors were encountered: