README.md

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Key Investigators

• Geoff Klein (U of T)

Project Description

Use a previously trained 3D U-Net from Keras to segment vertebral bodies from CT scans.

Objective

Place a pointer/fiducial marker on the scan with the mouse. Pull out the coordinates of the marker in image-space. Resample and crop the CT scan based on the marker's coordinates. Send the cropped portion of the scan through the segmentation model.

Approach and Plan

1. Describe planned approach to reach objectives.
2. ...
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Progress and Next Steps

Illustrations

Background and References

• Source code: https://github.com/kleingeo/Vertebral_Segmentation