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Currently voxel_vote makes len(dimension 0) * n_files calls to getHyperslab, resulting in a quite a number of I/O syscalls. It would be better to read in each file at a time and maintain a (sparse) label histogram at each voxel.
(One minor question is how to store the histograms, e.g. some sparse array format with a channels dimension for the label histograms seems appropriate, but it might be necessary to determine the maximum label in advance.)
The text was updated successfully, but these errors were encountered:
Currently voxel_vote makes
len(dimension 0) * n_files
calls to getHyperslab, resulting in a quite a number of I/O syscalls. It would be better to read in each file at a time and maintain a (sparse) label histogram at each voxel.(One minor question is how to store the histograms, e.g. some sparse array format with a channels dimension for the label histograms seems appropriate, but it might be necessary to determine the maximum label in advance.)
The text was updated successfully, but these errors were encountered: