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new version of go.obo has new bits #24

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rmflight opened this issue Feb 27, 2024 · 1 comment
Open

new version of go.obo has new bits #24

rmflight opened this issue Feb 27, 2024 · 1 comment
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@rmflight
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As of 2024-01-17 (latest go.obo release), there is a new typedef that causes gocats to choke.

[Typedef]
id: has_ontology_root_term
name: has ontology root term
namespace: external
xref: IAO:0000700
is_metadata_tag: true
is_class_level: true

This is used to define the roots of the three ontology namespaces: biological process, molecular function, cellular component. Which is neat. But the current version of gocats doesn't know about it, and crashes.

@rmflight rmflight self-assigned this Feb 27, 2024
@ehinderer
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I noticed this a few months ago but have not gotten around to fixing the issue. I'm using the Jan 2019 go.obo version for the time being, but I will try to address this soon.

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