diff --git a/.gitignore b/.gitignore index 20a167d..65d3394 100644 --- a/.gitignore +++ b/.gitignore @@ -28,3 +28,5 @@ wc10 ## the buffers from article vignettes/articles/buffer_res Meta +/doc/ +/Meta/ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/bufferdistance-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/bufferdistance-1.png index 44eae2b..d3b23d5 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/bufferdistance-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/bufferdistance-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/buffermax-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/buffermax-1.png index 657c382..b580932 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/buffermax-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/buffermax-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/buffermean-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/buffermean-1.png index 4eaca46..b6d686c 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/buffermean-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/buffermean-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/buffermedian-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/buffermedian-1.png index 252764e..db14579 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/buffermedian-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/buffermedian-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/centroid-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/centroid-1.png index 0f54671..1a44e22 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/centroid-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/centroid-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/geog-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/geog-1.png index 1856b23..c3faa23 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/geog-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/geog-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/max_env-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/max_env-1.png index ba026d9..4eadc6b 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/max_env-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/max_env-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/plotdataset-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/plotdataset-1.png index f8a8f2b..f5fa423 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/plotdataset-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/plotdataset-1.png differ diff --git a/docs/articles/buffer_and_randomPoints_files/figure-html/usr-1.png b/docs/articles/buffer_and_randomPoints_files/figure-html/usr-1.png index 27602e8..16183ff 100644 Binary files a/docs/articles/buffer_and_randomPoints_files/figure-html/usr-1.png and b/docs/articles/buffer_and_randomPoints_files/figure-html/usr-1.png differ diff --git a/docs/articles/buffer_res/envdist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png b/docs/articles/buffer_res/envdist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png index d5b6697..04b20ae 100644 Binary files a/docs/articles/buffer_res/envdist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png and b/docs/articles/buffer_res/envdist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png differ diff --git a/docs/articles/buffer_res/mindist_distance/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png b/docs/articles/buffer_res/mindist_distance/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png index 51617a4..53cd919 100644 Binary files a/docs/articles/buffer_res/mindist_distance/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png and b/docs/articles/buffer_res/mindist_distance/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png differ diff --git a/docs/articles/buffer_res/mindist_maxdist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png b/docs/articles/buffer_res/mindist_maxdist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png index e7981b5..c8e4f1a 100644 Binary files a/docs/articles/buffer_res/mindist_maxdist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png and b/docs/articles/buffer_res/mindist_maxdist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png differ diff --git a/docs/articles/buffer_res/mindist_meandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png b/docs/articles/buffer_res/mindist_meandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png index ac4db48..46ce667 100644 Binary files a/docs/articles/buffer_res/mindist_meandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png and b/docs/articles/buffer_res/mindist_meandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png differ diff --git a/docs/articles/buffer_res/mindist_mediandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png b/docs/articles/buffer_res/mindist_mediandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png index 9c54770..ad435b4 100644 Binary files a/docs/articles/buffer_res/mindist_mediandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png and b/docs/articles/buffer_res/mindist_mediandist/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png differ diff --git a/docs/articles/buffer_res/mindist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png b/docs/articles/buffer_res/mindist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png index be1d13d..929a4ec 100644 Binary files a/docs/articles/buffer_res/mindist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png and b/docs/articles/buffer_res/mindist_usrshp/Abarema_langsdorffii/present/data_setup/sdmdata_Abarema_langsdorffii.png differ diff --git a/docs/articles/modleR.html b/docs/articles/modleR.html index d242164..678179d 100644 --- a/docs/articles/modleR.html +++ b/docs/articles/modleR.html @@ -155,13 +155,6 @@
A shiny application currently available at: https://github.com/Model-R/modleR_shiny_app uses a -previous version of this workflow and is currently being updated to this -newest version.
-The workflow consists of mainly four functions that should be used @@ -680,9 +673,9 @@
plot(ens)
## [1] "Thu Aug 3 11:12:33 2023"
+## [1] "Thu Aug 3 12:28:46 2023"
## [1] "DONE svme !"
For the projected models, each proj_dir
has to have the
name of the projection
## [1] "Thu Aug 3 11:12:37 2023"
+## [1] "Thu Aug 3 12:28:50 2023"
## [1] "DONE svme !"
knitr::include_graphics("./projections/Abarema_langsdorffii/proj1/final_models/Abarema_langsdorffii_svme_raw_mean.png")
## [1] "Thu Aug 3 11:12:38 2023"
+## [1] "Thu Aug 3 12:28:52 2023"
## [1] "DONE svme !"
knitr::include_graphics("./projections/Abarema_langsdorffii/proj2/final_models/Abarema_langsdorffii_svme_raw_mean.png")
## [1] "Thu Aug 3 11:12:43 2023"
+## [1] "Thu Aug 3 12:28:56 2023"
## [1] "DONE svme !"
knitr::include_graphics("./projections/Abarema_langsdorffii/proj3/final_models/Abarema_langsdorffii_svme_raw_mean.png")
## [1] "Thu Aug 3 11:12:47 2023"
+## [1] "Thu Aug 3 12:29:00 2023"
## [1] "DONE svme !"
knitr::include_graphics("./projections/Abarema_langsdorffii/proj4/final_models/Abarema_langsdorffii_svme_raw_mean.png")