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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(cutstr)
export(enrichmat)
export(fgsea2)
export(fora2)
export(ggplotMDS)
export(label_signif)
export(limma_full)
export(msigdbr2)
export(plot_ORA)
export(plot_baseline)
export(plot_eigenfeature)
export(plot_pre_post)
export(plot_volcano)
export(range_extend)
export(rank_genes)
export(run_WGCNA)
export(theme_pub)
export(update_GO_names)
import(ComplexHeatmap)
import(ggplot2)
import(limma)
import(statmod)
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,pData)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcadd)
importFrom(BiocFileCache,bfccount)
importFrom(BiocFileCache,bfcnew)
importFrom(BiocFileCache,bfcquery)
importFrom(BiocFileCache,bfcrpath)
importFrom(WGCNA,TOMsimilarity)
importFrom(WGCNA,adjacency)
importFrom(WGCNA,bicor)
importFrom(WGCNA,labels2colors)
importFrom(WGCNA,mergeCloseModules)
importFrom(WGCNA,moduleEigengenes)
importFrom(WGCNA,pickSoftThreshold)
importFrom(WGCNA,plotDendroAndColors)
importFrom(WGCNA,standardColors)
importFrom(circlize,colorRamp2)
importFrom(cowplot,get_legend)
importFrom(cowplot,plot_grid)
importFrom(data.table,`.N`)
importFrom(data.table,`.SD`)
importFrom(data.table,`:=`)
importFrom(data.table,as.data.table)
importFrom(data.table,dcast)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(data.table,setDF)
importFrom(data.table,setDT)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(data.table,setorderv)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(edgeR,filterByExpr)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,fora)
importFrom(ggbeeswarm,position_beeswarm)
importFrom(ggplot2,.pt)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,layer_scales)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,sec_axis)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggpubr,stat_pvalue_manual)
importFrom(grDevices,bmp)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,tiff)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,par)
importFrom(graphics,text)
importFrom(grid,convertUnit)
importFrom(grid,gpar)
importFrom(grid,grid.circle)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(grid,grid.rect)
importFrom(grid,unit)
importFrom(latex2exp,TeX)
importFrom(limma,plotMDS)
importFrom(msigdbr,msigdbr)
importFrom(msigdbr,msigdbr_collections)
importFrom(ontologyIndex,get_OBO)
importFrom(patchwork,wrap_plots)
importFrom(purrr,map2_dbl)
importFrom(rlang,"!!")
importFrom(rlang,sym)
importFrom(scales,breaks_extended)
importFrom(scales,extended_breaks)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,hclust)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,terms)
importFrom(tibble,deframe)
importFrom(utils,head)
importFrom(utils,modifyList)
importFrom(utils,packageVersion)