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00_README.txt
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=======================================================================
=
= the Multivariate AnalysiS Applications for Microbial Ecology (MASAME)
= suite
=
=======================================================================
The apps in this directory will allow you to perform a set of statistical
analysis and screens typically suited to ecological data sets.
If you have queries, wish to report errors, or have enhancement requests,
contact [email protected]
====================
=
= Example data sets
=
====================
Please find demo data sets in the "Example data sets" directory. These
are correctly formatted for upload to MASAME Apps under the default
upload settings. More information is available in the README file in
the directory.
====================
=
= Analysis Apps
=
====================
To launch an analysis app, simply click on its name...
ANOSIM
- Analysis of similarity
CCA
- (partial) canonical correspondence analysis
ClusterAnalysis
- Hierarchical cluster analysis
Diag_multicollinearity
- screen your data set for multicollinear variables using correlation-
based approaches
Diag_normality
- screen your data set for univariate and multivariate normality and
apply transformations.
Diag_outliers
- screen your data set for univariate and multivariate outliers
NMDS
- Non-metric multidimensional scaling analysis
PCA
- Principal components analysis
PCNM
- Principal coordinates of neighbour matrices analysis
PCoA
- Metric multidimensional scaling analysis or principal coordinates analysis
PERMANOVA
- Permutational multivariate analysis of variance Using distance matrices
RDA
- (partial) redundancy analysis