README.md

Exosome_sensitive_TSS

Annotate CAGE clusters using a hierarchical approach

2_annotate_cage_data.R -geneUpstreamPromoterWindow <distance_in_nt> -tssUpstreamantisenseWindow <distance_in_nt> -tssDownstreamantisenseWindow <distance_in_nt> -b <CAGE_cluster_file.tab> -g <annotation_file.gtf> -o <output_file.gtf>