MLP-TF.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "import numpy as np\n",
    "import mlp_tensorflow as mlp_tf\n",
    "import matplotlib.pyplot as plt\n",
    "\n",
    "plt.style.use('seaborn')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Id</th>\n",
       "      <th>SepalLengthCm</th>\n",
       "      <th>SepalWidthCm</th>\n",
       "      <th>PetalLengthCm</th>\n",
       "      <th>PetalWidthCm</th>\n",
       "      <th>Species</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>1</td>\n",
       "      <td>5.1</td>\n",
       "      <td>3.5</td>\n",
       "      <td>1.4</td>\n",
       "      <td>0.2</td>\n",
       "      <td>Iris-setosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>2</td>\n",
       "      <td>4.9</td>\n",
       "      <td>3.0</td>\n",
       "      <td>1.4</td>\n",
       "      <td>0.2</td>\n",
       "      <td>Iris-setosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>3</td>\n",
       "      <td>4.7</td>\n",
       "      <td>3.2</td>\n",
       "      <td>1.3</td>\n",
       "      <td>0.2</td>\n",
       "      <td>Iris-setosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>4</td>\n",
       "      <td>4.6</td>\n",
       "      <td>3.1</td>\n",
       "      <td>1.5</td>\n",
       "      <td>0.2</td>\n",
       "      <td>Iris-setosa</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>5</td>\n",
       "      <td>5.0</td>\n",
       "      <td>3.6</td>\n",
       "      <td>1.4</td>\n",
       "      <td>0.2</td>\n",
       "      <td>Iris-setosa</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   Id  SepalLengthCm  SepalWidthCm  PetalLengthCm  PetalWidthCm      Species\n",
       "0   1            5.1           3.5            1.4           0.2  Iris-setosa\n",
       "1   2            4.9           3.0            1.4           0.2  Iris-setosa\n",
       "2   3            4.7           3.2            1.3           0.2  Iris-setosa\n",
       "3   4            4.6           3.1            1.5           0.2  Iris-setosa\n",
       "4   5            5.0           3.6            1.4           0.2  Iris-setosa"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data = pd.read_csv('data/Iris.csv')\n",
    "data.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "mapping = {'Species': {'Iris-setosa': 1, 'Iris-versicolor': 2, 'Iris-virginica': 3}}\n",
    "data.replace(mapping, inplace=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "0    1\n",
       "1    1\n",
       "2    1\n",
       "3    1\n",
       "4    1\n",
       "Name: Species, dtype: int64"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "features = data.iloc[:,1:5].copy()\n",
    "labels = data['Species']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "------------------------------\n",
      "x : (120, 4) (30, 4)\n",
      "y : (120,) (30,)\n",
      "------------------------------\n"
     ]
    }
   ],
   "source": [
    "train_x = features[:120]\n",
    "test_x = features[120:]\n",
    "\n",
    "train_y = labels[:120]\n",
    "test_y = labels[120:]\n",
    "\n",
    "print('-'*30)\n",
    "print('x :',train_x.shape, test_x.shape)\n",
    "print('y :',train_y.shape, test_y.shape)\n",
    "print('-'*30)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [],
   "source": [
    "train_x = train_x.astype('float32')\n",
    "test_x = test_x.astype('float32')\n",
    "\n",
    "train_y = train_y.astype('float32')\n",
    "test_y = test_y.astype('float32')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "import tensorflow as tf"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Parameters\n",
    "learning_rate = 0.001\n",
    "training_epochs = 15\n",
    "batch_size = 100\n",
    "display_step = 1\n",
    "\n",
    "# Network Parameters\n",
    "n_hidden_1 = 256 # 1st layer number of neurons\n",
    "n_hidden_2 = 256 # 2nd layer number of neurons"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "n_input = 4  # iris dataset (img shape: 28*28) \n",
    "n_classes = 3 # "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [],
   "source": [
    "# tf Graph input\n",
    "X = tf.placeholder(\"float\", [None, n_input])\n",
    "Y = tf.placeholder(\"float\", [None, n_classes])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "WARNING:tensorflow:From /usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/op_def_library.py:263: colocate_with (from tensorflow.python.framework.ops) is deprecated and will be removed in a future version.\n",
      "Instructions for updating:\n",
      "Colocations handled automatically by placer.\n"
     ]
    }
   ],
   "source": [
    "# Store layers weight & bias\n",
    "weights = {\n",
    "    'h1': tf.Variable(tf.random_normal([n_input, n_hidden_1])),\n",
    "    'h2': tf.Variable(tf.random_normal([n_hidden_1, n_hidden_2])),\n",
    "    'out': tf.Variable(tf.random_normal([n_hidden_2, n_classes]))\n",
    "}\n",
    "biases = {\n",
    "    'b1': tf.Variable(tf.random_normal([n_hidden_1])),\n",
    "    'b2': tf.Variable(tf.random_normal([n_hidden_2])),\n",
    "    'out': tf.Variable(tf.random_normal([n_classes]))\n",
    "}\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Create model\n",
    "def multilayer_perceptron(x):\n",
    "    # Hidden fully connected layer with 256 neurons\n",
    "    layer_1 = tf.add(tf.matmul(x, weights['h1']), biases['b1'])\n",
    "    # Hidden fully connected layer with 256 neurons\n",
    "    layer_2 = tf.add(tf.matmul(layer_1, weights['h2']), biases['b2'])\n",
    "    # Output fully connected layer with a neuron for each class\n",
    "    out_layer = tf.matmul(layer_2, weights['out']) + biases['out']\n",
    "    return out_layer"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "# Construct model\n",
    "logits = multilayer_perceptron(X)\n",
    "\n",
    "# Define loss and optimizer\n",
    "loss_op = tf.reduce_mean(tf.nn.softmax_cross_entropy_with_logits(\n",
    "    logits=logits,\n",
    "    labels=Y))\n",
    "\n",
    "optimizer = tf.train.AdamOptimizer(learning_rate=learning_rate)\n",
    "\n",
    "train_op = optimizer.minimize(loss_op)\n",
    "\n",
    "# Initializing the variables\n",
    "init = tf.global_variables_initializer()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0\n"
     ]
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    {
     "ename": "NameError",
     "evalue": "name 'mnist' is not defined",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mNameError\u001b[0m                                 Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-19-736b128e080a>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m      9\u001b[0m         \u001b[0;32mfor\u001b[0m \u001b[0mi\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mrange\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mtotal_batch\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     10\u001b[0m             \u001b[0mprint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mi\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 11\u001b[0;31m             \u001b[0mbatch_x\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbatch_y\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mmnist\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtrain\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mnext_batch\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mbatch_size\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m     12\u001b[0m             \u001b[0;31m# Run optimization op (backprop) and cost op (to get loss value)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     13\u001b[0m             _, c = sess.run([train_op, loss_op], feed_dict={X: batch_x,\n",
      "\u001b[0;31mNameError\u001b[0m: name 'mnist' is not defined"
     ]
    }
   ],
   "source": [
    "with tf.Session() as sess:\n",
    "    sess.run(init)\n",
    "\n",
    "    # Training cycle\n",
    "    for epoch in range(training_epochs):\n",
    "        avg_cost = 0.\n",
    "        total_batch = int(120/batch_size)\n",
    "        # Loop over all batches\n",
    "        for i in range(total_batch):\n",
    "            print(i)\n",
    "            batch_x, batch_y = mnist.train.next_batch(batch_size)\n",
    "            # Run optimization op (backprop) and cost op (to get loss value)\n",
    "            _, c = sess.run([train_op, loss_op], feed_dict={X: batch_x,\n",
    "                                                            Y: batch_y})\n",
    "            # Compute average loss\n",
    "            avg_cost += c / total_batch\n",
    "        # Display logs per epoch step\n",
    "        if epoch % display_step == 0:\n",
    "            print(\"Epoch:\", '%04d' % (epoch+1), \"cost={:.9f}\".format(avg_cost))\n",
    "    print(\"Optimization Finished!\")\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "# Test model\n",
    "pred = tf.nn.softmax(logits)  # Apply softmax to logits\n",
    "correct_prediction = tf.equal(tf.argmax(pred, 1), tf.argmax(Y, 1))\n",
    "# Calculate accuracy\n",
    "accuracy = tf.reduce_mean(tf.cast(correct_prediction, \"float\"))\n",
    "print(\"Accuracy:\", accuracy.eval({X: mnist.test.images, Y: mnist.test.labels}))"
   ]
  }
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