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DESCRIPTION
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Package: dynmethods
Type: Package
Title: Wrappers for trajectory inference methods
Version: 0.1.0
Authors@R: c(
person("Robrecht", "Cannoodt", email = "[email protected]", role = c("aut", "cre")),
person("Wouter", "Saelens", email = "[email protected]", role = c("aut")),
person("Helena", "Todorov", email = "[email protected]", role = c("aut")))
Description: dynmethods provides wrappers for TI methods and their respective plotting functions.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Depends:
R (>= 3.4.0)
Imports:
crayon,
desc,
devtools,
dplyr,
dyndimred,
dynplot,
dynutils,
dynwrap,
future,
jsonlite,
ggplot2,
glue,
grDevices,
grid,
igraph,
lhs,
magrittr,
methods,
parallel,
ParamHelpers (>= 1.11),
purrr,
reticulate,
readr,
reshape2,
stringr,
testthat,
tibble,
tidygraph,
tidyr,
viridis,
yaml
Suggests:
Biobase,
BiocGenerics,
cellTree,
coda,
destiny,
dyntoy,
embeddr,
GNG,
lle,
MASS,
Matrix,
MCMCglmm,
Mpath,
mfa,
monocle,
ouija,
phenopath,
princurve,
pseudogp,
reCAT,
rstan,
roxygen2,
scaterlegacy,
SCORPIUS,
SCOUP,
sincell,
SLICE,
SLICER,
slingshot,
StemID,
StemID2,
TSCAN,
Waterfall,
ggforce,
ggraph,
ggrepel,
knitr,
rmarkdown,
RColorBrewer,
tidyverse
Remotes:
berndbischl/ParamHelpers,
dynverse/dynutils,
dynverse/dyndimred,
dynverse/dynwrap,
dynverse/dynplot,
dynverse/dyntoy,
dynverse/cellTree@RELEASE_3_6,
dynverse/embeddr,
dynverse/destiny,
dynverse/monocle-release,
dynverse/Mpath,
dynverse/princurve,
dynverse/reCAT,
dynverse/scaterlegacy,
dynverse/SCOUP,
dynverse/SLICE,
dynverse/SLICER,
dynverse/StemID,
dynverse/StemID2,
dynverse/Waterfall,
igraph/rigraph,
kieranrcampbell/pseudogp,
kieranrcampbell/mfa,
kieranrcampbell/ouija,
kieranrcampbell/phenopath,
kstreet13/slingshot@develop,
rcannood/GNG,
rcannood/SCORPIUS,
zji90/TSCAN
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Collate:
'data.R'
'helper_set_cores.R'
'package.R'
'ti_angle.R'
'ti_celltree.R'
'wrapper_method_chooser.R'
'ti_wishbone.R'
'ti_waterfall.R'
'ti_tscan.R'
'ti_stemid2.R'
'ti_stemid.R'
'ti_slingshot.R'
'ti_slicer.R'
'ti_slice.R'
'ti_sincell.R'
'ti_shuffle.R'
'ti_scoup.R'
'ti_scorpius.R'
'ti_recat.R'
'ti_random.R'
'ti_pseudogp.R'
'ti_phenopath.R'
'ti_periodpc.R'
'ti_ouija.R'
'ti_mpath.R'
'ti_monocle.R'
'ti_mfa.R'
'ti_identity.R'
'ti_gng.R'
'ti_error.R'
'ti_embeddr.R'
'ti_dpt.R'
'ti_container.R'
'wrapper_check_dependencies.R'
'wrapper_docker.R'
'wrapper_plot_trajectory.R'