Support for Eclipse Data #319
straussmaximilian
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At this point, AlphaPept was written and optimized from Thermo data from Q-Exactive or Exploris data (MS1=MS2=Orbitrap). There is also MS1 = Orbitrap and MS2=Iontrap, for which AlphaPept might not produce ideal results. Currently, it is possible to tune the precursor tolerance to be within 10% of the number of protein groups that other software reports.
AlphaPept could be optimized to better support Eclipse instruments. Ideally, to match other software with the default settings.
Would you please upvote this idea if you think this is relevant?
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