plot coverage variation of a bin across all samples

[Kirk3gaard]

Make a function to plot coverage variation of a bin across all samples

Something like this

mmplot_coverage<-function(data,ncov=2,log.y=F,plotline=F) { dm<-melt(data$scaffolds,measure.vars = names(data$scaffolds)[c(4:(ncov+3))]) p<-ggplot(dm, aes(x = variable, y = value,col=tax,size=length)) + geom_point(alpha=0.1)+ theme_bw()+theme(axis.text.x = element_text(angle = 90))+ylab("Coverage") if (log.y == T){p <- p + scale_y_log10()} if (plotline==T){p <- p +geom_line(aes(group = scaffold),size=1)} return(p) }

[KasperSkytte]

It has been implemented in mmgenome2.