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Difficulty installing #38
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Hi Kasper,
ERROR: dependency ‘Rtsne.multicore’ is not available for package ‘mmgenome’
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Hi Anna! Try with I am currently working on mmgenome2 and it is almost done. Just need a get started guide and more information on the webpage, then it will be moved to Mads' github page and people should start using that instead. So hopefully this will be fixed in mmgenome2. Things have changed compared to mmgenome1, but hopefully for the better :) |
Thanks Kasper, |
The package is only used in mmload to calculate t-SNE of tetramers. So if you dont use it anyways, it would probably be easier to make your own mmgenome package on GitHub. Just fork mmgenome, and remove line 26 and 27 (and the comma at line 25 ofc) from the DESCRIPTION file in the mmgenome folder. Then you would be able to install mmgenome without Rtsne.multicore with Alternatively install a specific commit before tSNE was added to mmgenome, so fx 6a673e2, with fx |
Hi Kasper, |
Thanks. You're welcome :) |
When installing mmgenome from scratch with:
source("https://bioconductor.org/biocLite.R")
biocLite("Biostrings")
devtools::install_github("madsalbertsen/mmgenome/mmgenome")
it stops when installing a required package
Rtsne.multicore
with the error:Simply using
biocLite("madsalbertsen/mmgenome/mmgenome")
instead causes no trouble!The text was updated successfully, but these errors were encountered: