From cee4a9780619bbc0788714bd6eec4d9e40695830 Mon Sep 17 00:00:00 2001 From: arkiev <60497309+arkiev@users.noreply.github.com> Date: Fri, 11 Oct 2024 14:03:47 +1100 Subject: [PATCH] Update python/mrtrix3/commands/5ttgen/odf.py Co-authored-by: Robert Smith --- python/mrtrix3/commands/5ttgen/odf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/mrtrix3/commands/5ttgen/odf.py b/python/mrtrix3/commands/5ttgen/odf.py index fa7c60e858..3ac2875bf9 100644 --- a/python/mrtrix3/commands/5ttgen/odf.py +++ b/python/mrtrix3/commands/5ttgen/odf.py @@ -38,7 +38,7 @@ def usage(base_parser, subparsers): # pylint: disable=unused-variable def execute(): # pylint: disable=unused-variable # Extract l=0 term from WM - run.command(f'mrconvert', app.ARGS.template_odf_wm, '-coord 3 0 -axes 0,1,2 wm_vol.mif') + run.command(f'mrconvert {app.ARGS.odf_wm} -coord 3 0 -axes 0,1,2 wm_vol.mif') # Set negative values to zero run.command(f'mrcalc wm_vol.mif 0.0 -max wm_vol_pos.mif')