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Showing 5 changed files with 6 additions and 4 deletions.
2 changes: 1 addition & 1 deletion package/MDAnalysis/analysis/align.py
Original file line number Diff line number Diff line change
@@ -301,7 +301,7 @@ def _fit_to(mobile_coordinates, ref_coordinates, mobile_atoms,
Atoms to be translated
mobile_com: ndarray
array of xyz coordinate of mobile center of mass
ref_com: ndarray
ref_com : ndarray
array of xyz coordinate of reference center of mass
weights : array_like (optional)
choose weights. With ``None`` weigh each atom equally. If a float array
2 changes: 1 addition & 1 deletion package/MDAnalysis/analysis/contacts.py
Original file line number Diff line number Diff line change
@@ -333,7 +333,7 @@ def contact_matrix(d, radius, out=None):
distance matrix
radius : float
distance below which a contact is formed.
out: array (optional)
out : array (optional)
If `out` is supplied as a pre-allocated array of the correct
shape then it is filled instead of allocating a new one in
order to increase performance.
2 changes: 1 addition & 1 deletion package/MDAnalysis/analysis/diffusionmap.py
Original file line number Diff line number Diff line change
@@ -177,7 +177,7 @@ class DistanceMatrix(AnalysisBase):
scales at O(N^3) where N is the number of frames.
Cost can be reduced by increasing step interval or specifying a
start and stop value when calling :meth:`DistanceMatrix.run`.
select: str, optional
select : str, optional
Any valid selection string for
:meth:`~MDAnalysis.core.groups.AtomGroup.select_atoms`
This selection of atoms is used to calculate the RMSD between
2 changes: 1 addition & 1 deletion package/MDAnalysis/analysis/dihedrals.py
Original file line number Diff line number Diff line change
@@ -357,7 +357,7 @@ class Ramachandran(AnalysisBase):
name for the backbone N atom
ca_name : str (optional)
name for the alpha-carbon atom
check_protein: bool (optional)
check_protein : bool (optional)
whether to raise an error if the provided atomgroup is not a
subset of protein atoms
2 changes: 2 additions & 0 deletions package/MDAnalysis/analysis/helix_analysis.py
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@@ -306,6 +306,8 @@ class HELANAL(AnalysisBase):
of best fit, and the local screw angles.
flatten_single_helix : bool, optional
Whether to flatten results if only one selection is passed.
split_residue_sequences : bool, optional
Wether to split residues into a list of same or consecutive helices.
verbose : bool, optional
Turn on more logging and debugging.

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