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9. Inter-Subject Correlation.md

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Inter-Subject Correlation Analysis

Pre-Processing

  1. tcsh
  2. source .cshrc
  3. setenv SUBJECT_DIR /Users/jessica/data_analysis/isc_analysis/subjects
  4. Follow steps 1-6 from the Event-Related fMRI Analysis for EPI Data page.

ISC Analysis

  1. Open MatLab through terminal then run the startup.m file and set your subject directory
  2. Download isc_062024_f1_test.m and add it to you isc_analysis folder change the subject ID to those you want to include and change line 35 to the location of your isc_analysis folder. Make sure your directory is your isc_analysis folder and run. If done successfully, there should be 4 .stc files in your isc_analysis folder for the lh and rh 'isc_062024_f1_z_median' and 'isc_062024_f1_z'
  3. Download show_isc_260624.m and add it to you isc_analysis folder

Automated Pre-Processing

  1. tcsh
  2. source .cshrc
  3. setenv SUBJECT_DIR /Users/jessica/data_analysis/isc_analysis/subjects
  4. cd /Users/jessica/data_analysis/isc_analysis/subjects/isc_analysis
  5. ./sc_epi_pre_processing.script Pre-process the data using sc_epi_pre_processing.script make sure to change the subject directory and subject ID and that the name is a .script file for mac