From 289abe22585f4a4df2486e20670f5d4449eca9ae Mon Sep 17 00:00:00 2001 From: lcolladotor Date: Mon, 20 May 2024 21:29:11 -0400 Subject: [PATCH] Restore part of https://github.com/LieberInstitute/recountWorkflow/commit/02c7b88dc5664605c104c358512bf47035e8e2fd --- .github/workflows/check-bioc.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index ac29eb9..1b785a9 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -173,6 +173,10 @@ jobs: message(paste('****', Sys.time(), 'installing rcmdcheck and BiocCheck ****')) install.packages(c("rcmdcheck", "BiocCheck"), repos = BiocManager::repositories()) + ## Install all the regionReport dependencies + remotes::install_github("leekgroup/derfinderPlot") ## regionReport 1.29.1 needs derfinderPlot 1.29.1 + remotes::install_github("leekgroup/regionReport", dependencies = TRUE) + ## Pass #1 at installing dependencies message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****')) remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = FALSE, upgrade = TRUE)