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freeze.yml
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name: rnn_neo
channels:
- anaconda
- pytorch
- defaults
- bioconda
- conda-forge
- vacation
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- blas=1.0=mkl
- bwa=0.7.17=h5bf99c6_8
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.3.11=h06a4308_0
- certifi=2021.5.30=py36h06a4308_0
- cpuonly=2.0=0
- cudatoolkit=11.3.1=h2bc3f7f_2
- curl=7.87.0=h5eee18b_0
- dataclasses=0.8=pyh4f3eec9_6
- dbus=1.13.18=hb2f20db_0
- expat=2.5.0=h6a678d5_0
- fastp=0.23.4=hadf994f_2
- ffmpeg=4.3=hf484d3e_0
- freetype=2.12.1=h4a9f257_0
- gatk=3.8=py36_0
- gatk4=4.3.0.0=py36hdfd78af_0
- gdbm=1.18=h941a26a_0
- giflib=5.2.1=h5eee18b_3
- glib=2.63.1=h5a9c865_0
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- gsl=2.7.1=h6e86dc7_1
- hdf5=1.12.1=h70be1eb_2
- htslib=1.9=h244ad75_9
- intel-openmp=2022.1.0=h9e868ea_3769
- isa-l=2.30.0=h7f8727e_0
- java-jdk=8.0.92=1
- jpeg=9e=h5eee18b_1
- kallisto=0.48.0=h15996b6_2
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libblas=3.9.0=1_h86c2bf4_netlib
- libcblas=3.9.0=5_h92ddd45_netlib
- libcurl=7.87.0=h91b91d3_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=h46ee950_2
- libev=4.33=h7f8727e_1
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=13.2.0=h807b86a_5
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=13.2.0=h807b86a_5
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libnghttp2=1.52.0=ha637b67_1
- libopenblas=0.3.21=h043d6bf_0
- libpng=1.6.39=h5eee18b_0
- libssh2=1.10.0=h37d81fd_2
- libstdcxx-ng=13.2.0=h7e041cc_5
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.2.0=hecacb30_2
- libunistring=0.9.10=h27cfd23_0
- libuv=1.44.2=h5eee18b_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- libxcb=1.15=h7f8727e_0
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=h6a678d5_0
- mkl=2020.2=256
- mkl-service=2.3.0=py36he8ac12f_0
- mkl_fft=1.3.0=py36h54f3939_0
- mkl_random=1.1.1=py36h0573a6f_0
- ncurses=6.1=he6710b0_1
- nettle=3.7.3=hbbd107a_1
- numpy-base=1.19.2=py36hfa32c7d_0
- olefile=0.46=pyhd3eb1b0_0
- openh264=2.1.1=h4ff587b_0
- openjdk=8.0.152=h7b6447c_3
- openssl=1.1.1w=h7f8727e_0
- pcre=8.45=h295c915_0
- perl=5.34.0=h5eee18b_2
- pillow=8.3.1=py36h5aabda8_0
- pip=21.2.2=py36h06a4308_0
- psutil=5.8.0=py36h27cfd23_1
- python=3.6.10=h0371630_0
- pytorch=1.10.2=py3.6_cpu_0
- pytorch-mutex=1.0=cpu
- readline=7.0=h7b6447c_5
- samtools=1.9=h10a08f8_12
- setuptools=58.0.4=py36h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.31.1=h7b6447c_0
- sra-tools=2.9.6=hf484d3e_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=0.10.2=py36_cu113
- torchvision=0.11.3=py36_cu113
- trimmomatic=0.39=hdfd78af_2
- typing_extensions=4.1.1=pyh06a4308_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.10=h5eee18b_1
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hc292b87_0
- pip:
- biopython==1.79
- biothings-client==0.3.1
- charset-normalizer==2.0.12
- idna==3.6
- importlib-resources==5.4.0
- joblib==1.1.1
- numpy==1.19.5
- pandas==1.1.5
- python-dateutil==2.9.0.post0
- pytz==2023.3.post1
- requests==2.27.1
- scikit-learn==0.24.2
- scipy==1.5.4
- threadpoolctl==3.1.0
- tqdm==4.64.1
- urllib3==1.26.18
- zipp==3.6.0
prefix: /home/lijiajun/software/miniconda3/envs/rnn_neo