ott_env.yml

name: ott
channels:
    - conda-forge
dependencies:
    - pip:
          - absl-py==1.4.0
          - anndata==0.9.1
          - black==23.3.0
          - cached-property==1.5.2
          - cfgv==3.3.1
          - chex==0.1.7
          - click==8.1.3
          - contourpy==1.0.7
          - cycler==0.11.0
          - distlib==0.3.6
          - dm-tree==0.1.8
          - etils==1.2.0
          - filelock==3.12.0
          - flake8==6.0.0
          - flax==0.6.9
          - fonttools==4.39.3
          - h5py==3.8.0
          - identify==2.5.24
          - jax-dataloader==0.0.3
          - kiwisolver==1.4.4
          - llvmlite==0.40.0
          - markdown-it-py==2.2.0
          - matplotlib==3.7.1
          - mccabe==0.7.0
          - mdurl==0.1.2
          - ml-dtypes==0.1.0
          - msgpack==1.0.5
          - mypy-extensions==1.0.0
          - natsort==8.3.1
          - networkx==3.1
          - nodeenv==1.8.0
          - numba==0.57.0
          - numpy==1.24.2
          - opt-einsum==3.3.0
          - optax==0.1.4
          - orbax-checkpoint==0.2.1
          - ott-jax==0.4.0
          - pandas==2.0.1
          - pathspec==0.11.1
          - patsy==0.5.3
          - pillow==9.5.0
          - pre-commit==3.3.2
          - pycodestyle==2.10.0
          - pyflakes==3.0.1
          - pynndescent==0.5.10
          - pyparsing==3.0.9
          - pytz==2023.3
          - rich==13.3.4
          - scanpy==1.9.3
          - scikit-learn==1.2.2
          - scipy==1.10.1
          - seaborn==0.12.2
          - session-info==1.0.0
          - statsmodels==0.14.0
          - stdlib-list==0.8.0
          - tensorstore==0.1.35
          - threadpoolctl==3.1.0
          - tomli==2.0.1
          - toolz==0.12.0
          - tqdm==4.65.0
          - tzdata==2023.3
          - umap-learn==0.5.3
          - virtualenv==20.23.0